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immunomind
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immunarch
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
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Support for MiXCR 4.1 format
#316
cwoehle
opened
2 years ago
4
Clonotype file is being read in wrong - the same clonotype is being split into 2 different clonotypes.
#315
ms3389
opened
2 years ago
3
Adjust barcodes for select_barcodes and select_clusters with multiple samples
#314
flde
closed
1 year ago
2
repExplore of aa and nt give the same result
#313
jeitziner
opened
2 years ago
1
Memory limitations for Immunarch on large Repertoires
#312
bcorrie
opened
2 years ago
0
repLoad error with 10x (fails to read bam.bai)
#311
flde
closed
1 year ago
4
Support for coloring specific clones and groups on repClonalFamily() tree visualization
#310
Alexander230
closed
2 years ago
0
Bugfix for detection of phylip dnapars on Windows
#309
Alexander230
closed
2 years ago
0
Possible bug with geneUsageAnalysis
#308
mehdihicham
opened
2 years ago
0
Error in PHYLIP and repClonalFamily
#307
Rongfang-Shen
opened
2 years ago
4
Is there an export option?
#306
wkwong-henlix
closed
2 years ago
0
Help and idea
#305
beginner984
opened
2 years ago
0
Immunarch 0.8.0 release
#304
Alexander230
closed
2 years ago
0
Error in Clustal W and repAlignLineage
#303
huangyan530
opened
2 years ago
10
pubRep gives allele instead of gene
#302
Alexander230
opened
2 years ago
1
repFilter not available
#301
itagaf
opened
2 years ago
1
what is the best way to merge different samples into a single immunarch object?
#300
eroesti
closed
2 years ago
2
Alignment on the germline
#299
NoELJ22
closed
2 years ago
4
Problem in reading metadata
#298
Mussa1122
opened
2 years ago
4
Update for seqDist and seqCluster
#297
Alexander230
closed
2 years ago
0
How to split the immune repertoire data to clusters from single-cell barcodes
#296
amufaamo
opened
2 years ago
0
Seq cluster bugfix
#295
ivan-balashov
closed
2 years ago
0
Clarification on repDiversity raref method
#294
HyprValent
opened
2 years ago
0
repLoad issue with TRUST4 output
#293
MartaSilvai3s
opened
2 years ago
1
Fix for ClustalW executable name
#292
Alexander230
closed
2 years ago
0
Support for cell hashing (10x data)
#291
CAC13
opened
2 years ago
1
Error loading examples 10x Genomics filtered contig annotations data
#290
ewalsh3
opened
2 years ago
1
seqCluster fix of multiple cluster assignment
#289
ivan-balashov
closed
2 years ago
1
repGermline tests
#288
Alexander230
closed
2 years ago
0
Visualization of rarefaction curves by a grouping variable causes system crash
#287
canuckafar
opened
2 years ago
2
Remove non-productive sequences
#286
anabbi
opened
2 years ago
2
Error in loading data of 10X with "missing value where TRUE/FALSE needed"
#285
chiaofengcheng
opened
2 years ago
4
BCR pipeline bugfixes
#284
Alexander230
closed
2 years ago
1
phylogenetic analysis with missing d_gene
#283
mihem
opened
2 years ago
5
Test Immunarch BCR pipeline with new single cell data
#282
Alexander230
closed
2 years ago
0
repDiversity error
#281
paulatn240
closed
2 years ago
7
unsupported format
#280
Miriam-Zu
opened
2 years ago
1
RepOverlapAnalysis Function Error
#279
dimitrisokolowskei
closed
2 years ago
2
How does Immunarch define a clone? (AIRR and 10x formats)
#278
kira-neller
opened
2 years ago
1
Update tutorials
#277
MVolobueva
closed
2 years ago
0
Immunarch 0.7.0 release
#276
Alexander230
closed
2 years ago
0
Error in repLoad, unsupported format
#275
mengfeiwangdmu
opened
2 years ago
1
fixVis : Error in if (is.na(.plot)) { : the condition has length > 1
#274
Valeriy-Tereshchenko
closed
2 years ago
3
Get AIRR format data from 10x Genomics data
#273
amufaamo
opened
2 years ago
2
chao1 return NA if there is count 2 but no count 1
#272
shengqh
opened
2 years ago
0
Update IMGT database
#271
MVolobueva
opened
2 years ago
0
Clonal tree visualization
#270
Alexander230
closed
2 years ago
2
SHM description
#269
MVolobueva
closed
2 years ago
0
Update BCRpipeline adding SHM description
#268
MVolobueva
closed
2 years ago
0
Error in repload when loading metadata file
#267
nkric
closed
2 years ago
3
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