Add CWL CommandLineTool for each application step - Githubissues

inab / Wetlab2Variations

Wetlab2Variations Workflow Demonstrator

Apache License 2.0

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Add CWL CommandLineTool for each application step #2

Open susheel opened 5 years ago

susheel commented 5 years ago

[x] cutadapt (v.1.18) --> /cwl/tools/cutadapt/cutadapt-v.0.7.17.cwl
[ ] bwa-mem (v.0.7.17) --> /cwl/tools/bwa-mem/bwa-mem-v.0.7.17.cwl
[ ] Sambamba (v.0.6.8 ) --> /cwl/tools/Sambamba/Sambamba-v.0.6.8.cwl
[x] Picard (v.2.18.25) --> /cwl/tools/Picard/Picard-v.2.18.25.cwl
[ ] GATK (v.3.6-0) --> /cwl/tools/GATK/GATK-v.3.6-0.cwl
[ ] fastqc (v.0.11.8) --> /cwl/tools/fastqc/fastqc-v.0.11.8.cwl

susheel commented 5 years ago

@rtonda Could you start adding the cutadapt CWL step?