informatics-lab / our-pangeo

A helm chart for deploying a custom flavour Pangeo stack
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Errors after reconnecting to JupyterLab #30

Open dkangin opened 5 years ago

dkangin commented 5 years ago

How to reproduce:

This does differ from the usual behaviour during the timeout, when the session is inactive and the new JupyterLab session is initiated when trying to reload it; in the reported case, it is possible to reconnect to an old session, however this session does not let open the files or new python notebooks.

Not sure whether this error is of random nature or it appears consistently. The screenshot, showing the error when opening the kernel session, is given below:

screenshot_2019-04-16_at_14 55 19
jacobtomlinson commented 5 years ago

This is due to a disk space issue

[I 2019-04-25 15:40:51.771 SingleUserLabApp handlers:153] Creating new notebook in /work/revolver
[E 2019-04-25 15:40:51.772 SingleUserLabApp filemanager:485] Error while saving file: work/revolver/Untitled.ipynb database or disk is full
    Traceback (most recent call last):
      File "/opt/conda/lib/python3.6/site-packages/notebook/services/contents/filemanager.py", line 470, in save
        self.check_and_sign(nb, path)
      File "/opt/conda/lib/python3.6/site-packages/notebook/services/contents/manager.py", line 487, in check_and_sign
        self.notary.sign(nb)
      File "/opt/conda/lib/python3.6/site-packages/nbformat/sign.py", line 449, in sign
        self.store.store_signature(signature, self.algorithm)
      File "/opt/conda/lib/python3.6/site-packages/nbformat/sign.py", line 207, in store_signature
        if not self.check_signature(digest, algorithm):
      File "/opt/conda/lib/python3.6/site-packages/nbformat/sign.py", line 239, in check_signature
        (datetime.utcnow(), algorithm, digest),
    sqlite3.OperationalError: database or disk is full
jacobtomlinson commented 5 years ago

jupyterlab/jupyterlab#6248