github-actions[bot]
commented
10 months ago 
Code Coverage Summary
Filename Stmts Miss Cover Missing
--------------------------------------- ------- ------ ------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R/abnormal_by_baseline.R 68 2 97.06% 78-79
R/abnormal_by_marked.R 55 5 90.91% 78-82
R/abnormal_by_worst_grade_worsen.R 116 3 97.41% 240-242
R/abnormal_by_worst_grade.R 60 0 100.00%
R/abnormal.R 43 0 100.00%
R/analyze_variables.R 190 10 94.74% 489-490, 506, 530, 686-687, 692-693, 711-712
R/analyze_vars_in_cols.R 179 35 80.45% 168-169, 184, 207-212, 227, 241-242, 250-258, 264-270, 349-355
R/bland_altman.R 92 55 40.22% 37, 78-133
R/combination_function.R 9 0 100.00%
R/compare_variables.R 124 17 86.29% 131-135, 247, 325-334, 389-390, 396
R/control_incidence_rate.R 20 8 60.00% 32-35, 38-41
R/control_logistic.R 7 0 100.00%
R/control_step.R 23 1 95.65% 58
R/control_survival.R 15 0 100.00%
R/count_cumulative.R 50 1 98.00% 67
R/count_missed_doses.R 34 0 100.00%
R/count_occurrences_by_grade.R 113 5 95.58% 101, 151-153, 156
R/count_occurrences.R 115 1 99.13% 108
R/count_patients_events_in_cols.R 67 1 98.51% 53
R/count_patients_with_event.R 47 0 100.00%
R/count_patients_with_flags.R 58 4 93.10% 56-57, 62-63
R/count_values.R 27 0 100.00%
R/cox_regression_inter.R 154 0 100.00%
R/cox_regression.R 161 0 100.00%
R/coxph.R 167 7 95.81% 191-195, 239, 254, 262, 268-269
R/d_pkparam.R 406 0 100.00%
R/decorate_grob.R 173 40 76.88% 235-266, 326-328, 339, 360-397
R/desctools_binom_diff.R 621 64 89.69% 53, 88-89, 125-126, 129, 199, 223-232, 264, 266, 286, 290, 294, 298, 353, 356, 359, 362, 422, 430, 439, 444-447, 454, 457, 466, 469, 516-517, 519-520, 522-523, 525-526, 593, 604-616, 620, 663, 676, 680
R/df_explicit_na.R 30 0 100.00%
R/estimate_multinomial_rsp.R 50 1 98.00% 63
R/estimate_proportion.R 205 12 94.15% 78-85, 89, 94, 315, 482, 588
R/fit_rsp_step.R 36 0 100.00%
R/fit_survival_step.R 36 0 100.00%
R/formatting_functions.R 181 3 98.34% 145, 155, 280
R/g_forest.R 571 412 27.85% 183-186, 189-192, 195-201, 204-207, 210-213, 240, 252-255, 260-261, 277, 287-290, 337-340, 347, 416, 493-1013
R/g_lineplot.R 206 34 83.50% 168, 181, 210, 236-239, 315-322, 340-341, 347-357, 449, 455, 457, 499-500, 504-505
R/g_step.R 68 1 98.53% 109
R/g_waterfall.R 47 0 100.00%
R/h_adsl_adlb_merge_using_worst_flag.R 73 0 100.00%
R/h_biomarkers_subgroups.R 45 0 100.00%
R/h_cox_regression.R 110 0 100.00%
R/h_logistic_regression.R 468 3 99.36% 206-207, 276
R/h_map_for_count_abnormal.R 57 2 96.49% 77-78
R/h_pkparam_sort.R 15 0 100.00%
R/h_response_biomarkers_subgroups.R 76 0 100.00%
R/h_response_subgroups.R 171 12 92.98% 257-270
R/h_stack_by_baskets.R 67 3 95.52% 68-69, 95
R/h_step.R 180 0 100.00%
R/h_survival_biomarkers_subgroups.R 81 0 100.00%
R/h_survival_duration_subgroups.R 200 12 94.00% 259-271
R/imputation_rule.R 17 2 88.24% 54-55
R/incidence_rate.R 96 7 92.71% 44-51
R/individual_patient_plot.R 133 0 100.00%
R/kaplan_meier_plot.R 688 65 90.55% 236-239, 279-314, 323-327, 538, 725-727, 735-737, 769-770, 943-946, 1169, 1495-1506
R/logistic_regression.R 102 0 100.00%
R/missing_data.R 21 3 85.71% 32, 66, 76
R/odds_ratio.R 109 0 100.00%
R/prop_diff_test.R 91 0 100.00%
R/prop_diff.R 265 16 93.96% 62-65, 97, 282-289, 432, 492, 597
R/prune_occurrences.R 57 10 82.46% 138-142, 188-192
R/response_biomarkers_subgroups.R 61 0 100.00%
R/response_subgroups.R 185 4 97.84% 267, 315-317
R/riskdiff.R 59 7 88.14% 102-105, 114, 124-125
R/rtables_access.R 38 4 89.47% 159-162
R/score_occurrences.R 20 1 95.00% 124
R/split_cols_by_groups.R 49 0 100.00%
R/stat.R 59 3 94.92% 73-74, 129
R/summarize_ancova.R 104 2 98.08% 172, 177
R/summarize_change.R 30 0 100.00%
R/summarize_colvars.R 13 2 84.62% 72-73
R/summarize_coxreg.R 178 6 96.63% 201-202, 209, 346-347, 442
R/summarize_glm_count.R 195 27 86.15% 206, 224-256, 301-302
R/summarize_num_patients.R 99 9 90.91% 108-110, 160-161, 252-257
R/summarize_patients_exposure_in_cols.R 96 1 98.96% 42
R/survival_biomarkers_subgroups.R 63 0 100.00%
R/survival_coxph_pairwise.R 76 9 88.16% 51-59
R/survival_duration_subgroups.R 184 0 100.00%
R/survival_time.R 79 0 100.00%
R/survival_timepoint.R 113 7 93.81% 120-126
R/utils_checkmate.R 68 0 100.00%
R/utils_default_stats_formats_labels.R 136 4 97.06% 72, 577-580
R/utils_factor.R 109 2 98.17% 84, 302
R/utils_ggplot.R 72 0 100.00%
R/utils_grid.R 111 5 95.50% 149, 258-265
R/utils_rtables.R 100 9 91.00% 39, 46, 51, 58-62, 403-404
R/utils_split_funs.R 52 2 96.15% 81, 93
R/utils.R 137 10 92.70% 92, 94, 98, 118, 121, 124, 128, 137-138, 311
TOTAL 10232 971 90.51%Diff against main
Filename Stmts Miss Cover
---------------- ------- ------ -------
R/bland_altman.R +30 +30 -19.46%
TOTAL +30 +30 -0.27%Results for commit: ba04f35c7b5876df9765f2ad91cac23d32cb25ad
Minimum allowed coverage is 80%
:recycle: This comment has been updated with latest results
I had issues with running pre-commit due to bioc packages but those are not needed at all!