Open fplazaonate opened 10 years ago
Hi, please repost this question on http://ioncommunity.lifetechnologies.com/ It will get more visibility there with the product support and software dev teams.
Also note that this TMAP repo is no longer maintained or developed. The current versions of TMAP that are released with Torrent Suite are here https://github.com/iontorrent/TS/tree/master/Analysis/TMAP Try the latest code there to see if you can reproduce the problem.
I know there is an upper limit to genome size. hg19 certainly works, but the very largest genomes will fail.
Thanks for your answer. I will try with the new repo.
Hi, I tried to index a 3 million entries FASTA file. I stopped TMAP index after 18 hours of computing because I thought it was abnormally long. (correct me if I am wrong) By invoking gstack, TMAP seemed to be stuck in the tmap_refseq_fasta2pac function
Do you know how to solve this problem? Thanks in advance.