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iqbal-lab-org
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pandora
Pan-genome inference and genotyping with long noisy or short accurate reads
MIT License
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Upgrading pandora required c++ version from c++11 to c++14
#307
leoisl
closed
1 year ago
4
Refactor pandora index into a single, self-contained file
#306
leoisl
closed
1 year ago
13
Add new command pandora subindex
#305
leoisl
closed
1 year ago
1
Handling huge indexes with few GBs of RAM
#304
leoisl
opened
1 year ago
1
Logging performance of de novo variant discovery with racon
#303
leoisl
opened
1 year ago
5
Improve runtime of de novo variant discovery with racon
#302
mbhall88
closed
1 year ago
4
Coarse-grained simulation and evaluation framework to evaluate pandora mapping
#301
leoisl
opened
1 year ago
4
SAM file discussion
#300
leoisl
opened
1 year ago
8
Use racon for de novo variant discovery
#299
mbhall88
closed
1 year ago
24
Use racon for de novo variant discovery
#298
mbhall88
closed
1 year ago
1
Move CI from Travis and container building from Quay to GH actions
#297
leoisl
closed
1 year ago
3
Bump version to 0.9.2
#296
mbhall88
closed
2 years ago
0
Handle ambiguous bases
#295
mbhall88
closed
2 years ago
13
How to deal with ambiguous bases in reads
#294
mbhall88
closed
2 years ago
6
Failed to find alternate path
#293
mbhall88
opened
2 years ago
4
Define loci sequences in VCF header
#292
leoisl
closed
2 years ago
4
How to improve performance for Illumina-based analysis of viral pangenome
#291
dandaman
opened
2 years ago
12
How does pandora handle paired-end Illumina data?
#290
dandaman
closed
2 years ago
2
Linking against musl statically
#289
leoisl
opened
2 years ago
4
Crash with pandora compare --clean
#288
kdm9
opened
2 years ago
1
Data for the paper to test software
#287
jdeligt
opened
2 years ago
1
Haplotype phasing and coverage info in VCF
#286
gavinmdouglas
closed
2 years ago
5
Robust TSV file parsing
#285
mbhall88
closed
2 years ago
0
Change SVTYPE to VC
#284
mbhall88
closed
2 years ago
2
[Question] Could genotyping of SNPs of metagenomic reads work?
#283
matrs
closed
3 years ago
2
Outputting minimizer matches in a proprietary file format
#282
leoisl
closed
1 year ago
1
Generating SAM-like files
#281
leoisl
closed
1 year ago
1
0.9.1
#280
leoisl
closed
3 years ago
0
getting position of variants with respect to the genome
#279
smb20200615
opened
3 years ago
6
0.9.0
#278
leoisl
closed
3 years ago
0
Is it possible to resume a time consuming compare denovo job without having to rerun everything?
#277
smb20200615
opened
3 years ago
3
Make index a single, binary file
#276
mbhall88
closed
1 year ago
19
Make pandora instalable through conda
#275
leoisl
closed
3 years ago
1
Make pandora instalable through conda
#274
leoisl
closed
3 years ago
1
Merge dev into master
#273
leoisl
closed
3 years ago
0
0.9.0-rc2
#272
leoisl
closed
3 years ago
8
0.9.0 -> 0.9.0-rc1
#271
leoisl
closed
3 years ago
0
Use musl libc instead of Holy Build Box to build precompiled portable binaries
#270
leoisl
closed
3 years ago
1
Automate the production of release assets
#269
leoisl
opened
3 years ago
0
Local updates with unit tests
#268
leoisl
closed
3 years ago
16
Local updates with pr 265
#267
leoisl
closed
3 years ago
0
Version 0.8.0
#266
mbhall88
closed
3 years ago
4
Don't assume ONT reads are longer than loci
#265
mbhall88
closed
3 years ago
0
Make GATB a git submodule instead of downloading it during compilation
#264
leoisl
closed
3 years ago
11
Expose CLI parameter for maximum coverage on a single k-mer
#263
mbhall88
opened
3 years ago
8
Discussion: assumptions relating to cluster size expectations and coverage estimation
#262
mbhall88
closed
3 years ago
5
How to better represent dense regions with VCF
#261
leoisl
opened
3 years ago
1
pandora vcf question
#260
smb20200615
closed
3 years ago
6
Put sample pangraphs in separate directory
#259
mbhall88
opened
3 years ago
2
Tidy up mapped reads output
#258
mbhall88
closed
1 year ago
6
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