polishing contig with Nanopore Q20 read?

isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

https://github.com/lbcb-sci/racon

MIT License

269 stars 49 forks source link

polishing contig with Nanopore Q20 read? #231

Closed zmz1988 closed 1 year ago

zmz1988 commented 1 year ago

Hi, may I ask whether you have a recommendation setting for the Nanopore Q20 reads? Something like --quality-threshold 20, --error-threshold 0.05?

Thanks in advance!!

rvaser commented 1 year ago

Hello, I think the default settings should be alright.

Best regards, Robert