jakesylvestre / cing

Automatically exported from code.google.com/p/cing
0 stars 0 forks source link

no chain ID in distance_constraint_list.txt #236

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago
Reported by Chris Penkett:

What steps will reproduce the problem?
1. Look at nrg-cing 2otk
..., in the text file for distance constraints, there is no chain ID, e.g., for 
2otk with chains A,B,C:

http://nmr.cmbi.ru.nl/NRG-CING/data/ot/2otk/2otk.cing/2otk/Cing/distance_constra
int_list.txt

the residues are just numbered and named but without chain identifiers.
2.
3.

What is the expected output? What do you see instead?

Please use labels and text to provide additional information.

Original issue reported on code.google.com by jurge...@gmail.com on 14 Apr 2010 at 8:34

GoogleCodeExporter commented 8 years ago
In the PDB file, 2otk has random chain ID's - D,E and F or something.

Original comment by chris.pe...@gmail.com on 14 Apr 2010 at 3:22

GoogleCodeExporter commented 8 years ago
Fixed in r753.

Instead of:
CING 1> m.A.VAL171.C
Out[1]: <Atom VAL171.C>

I now get:
CING 4> m.A.VAL171.C
Out[4]: <Atom A.VAL171.C>

For entry 1brv I tested. Next iteration of NRG-CING this will be updated.

Original comment by jurge...@gmail.com on 14 Apr 2010 at 3:31

GoogleCodeExporter commented 8 years ago
Just updating Chris' id.

Original comment by jurge...@gmail.com on 14 Apr 2010 at 3:33

GoogleCodeExporter commented 8 years ago

Original comment by jurge...@gmail.com on 14 Apr 2010 at 6:21