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jdidion / atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)
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Install Error #132

Open JChristopherEllis opened 1 year ago

JChristopherEllis commented 1 year ago

Hi, I have installed atropos on a number of different machines through the years with out issues. However, recently I have not been able to install atropos. I get the following error...

conda install -c bioconda atropos Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: - Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:

Your installed version is: 2.35

What can I do to resolve this problem?

Thanks!

jdidion commented 1 year ago

This seems to be a common issue people encounter with installing python packages using conda, for example see https://www.biostars.org/p/9522705/#9522724. I believe it is due to a conflict between your python and gcc versions and not anything specific to atropos.