Install issue - Githubissues

I'm trying to install fdasrsf from a jupyter notebook, using

!git clone https://github.com/jdtuck/fdasrsf_python.git !pip install ./fdasrsf_python

and I get

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for fdasrsf ERROR: Could not build wheels for fdasrsf, which is required to install pyproject.toml-based projects

any help would be appreciated

Full output:

Processing c:\users\micha\documents\github\machine-learning\untitled folder\fdasrsf_python Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: Cython in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (3.0.10) Requirement already satisfied: matplotlib in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (3.5.1) Requirement already satisfied: numpy in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (1.21.6) Requirement already satisfied: scipy in c:\users\micha\appdata\roaming\python\python39\site-packages (from fdasrsf==2.5.10) (1.11.1) Requirement already satisfied: joblib in c:\users\micha\appdata\roaming\python\python39\site-packages (from fdasrsf==2.5.10) (1.3.2) Requirement already satisfied: patsy in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (0.5.2) Requirement already satisfied: tqdm in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (4.65.0) Requirement already satisfied: six in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (1.16.0) Requirement already satisfied: numba in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (0.55.1) Requirement already satisfied: cffi>=1.0.0 in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (1.16.0) Requirement already satisfied: pyparsing in c:\users\micha\anaconda3\lib\site-packages (from fdasrsf==2.5.10) (3.0.9) Requirement already satisfied: pycparser in c:\users\micha\anaconda3\lib\site-packages (from cffi>=1.0.0->fdasrsf==2.5.10) (2.21) Requirement already satisfied: cycler>=0.10 in c:\users\micha\anaconda3\lib\site-packages (from matplotlib->fdasrsf==2.5.10) (0.11.0) Requirement already satisfied: fonttools>=4.22.0 in c:\users\micha\anaconda3\lib\site-packages (from matplotlib->fdasrsf==2.5.10) (4.51.0) Requirement already satisfied: kiwisolver>=1.0.1 in c:\users\micha\anaconda3\lib\site-packages (from matplotlib->fdasrsf==2.5.10) (1.4.4) Requirement already satisfied: packaging>=20.0 in c:\users\micha\anaconda3\lib\site-packages (from matplotlib->fdasrsf==2.5.10) (23.2) Requirement already satisfied: pillow>=6.2.0 in c:\users\micha\anaconda3\lib\site-packages (from matplotlib->fdasrsf==2.5.10) (10.2.0) Requirement already satisfied: python-dateutil>=2.7 in c:\users\micha\anaconda3\lib\site-packages (from matplotlib->fdasrsf==2.5.10) (2.8.2) Collecting llvmlite<0.39,>=0.38.0rc1 (from numba->fdasrsf==2.5.10) Using cached llvmlite-0.38.1-cp39-cp39-win_amd64.whl.metadata (4.7 kB) Requirement already satisfied: setuptools in c:\users\micha\anaconda3\lib\site-packages (from numba->fdasrsf==2.5.10) (68.2.2) Requirement already satisfied: colorama in c:\users\micha\anaconda3\lib\site-packages (from tqdm->fdasrsf==2.5.10) (0.4.6) Using cached llvmlite-0.38.1-cp39-cp39-win_amd64.whl (23.2 MB) Building wheels for collected packages: fdasrsf Building wheel for fdasrsf (pyproject.toml): started Building wheel for fdasrsf (pyproject.toml): finished with status 'error' Failed to build fdasrsf

error: subprocess-exited-with-error

Building wheel for fdasrsf (pyproject.toml) did not run successfully. exit code: 1

[108 lines of output] not modified: 'build\_DP.c' generating build_DP.c (already up-to-date) running bdist_wheel running build running build_py copying fdasrsf\bayesian_functions.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\boxplots.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\curve_functions.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\curve_pcr_regression.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\curve_regression.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\curve_stats.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\elastic_changepoint.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\elastic_glm_regression.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\fPCA.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\fPLS.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\geodesic.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\geometry.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\gp.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\image.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\image_functions.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\interparc.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\kmeans.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\pcr_regression.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\plot_style.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\rbfgs.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\regression.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\time_warping.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\tolerance.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\umap_metric.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf\utility_functions.py -> build\lib.win-amd64-cpython-39\fdasrsf copying fdasrsf__init__.py -> build\lib.win-amd64-cpython-39\fdasrsf running egg_info writing fdasrsf.egg-info\PKG-INFO writing dependency_links to fdasrsf.egg-info\dependency_links.txt writing requirements to fdasrsf.egg-info\requires.txt writing top-level names to fdasrsf.egg-info\top_level.txt reading manifest file 'fdasrsf.egg-info\SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'fdasrsf.egg-info\SOURCES.txt' running build_ext No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\numpy\distutils\system_info.py:1914: UserWarning: Optimized (vendor) Blas libraries are not found. Falls back to netlib Blas library which has worse performance. A better performance should be easily gained by switching Blas library. if self._calc_info(blas): C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\numpy\distutils\system_info.py:1914: UserWarning: Blas (http://www.netlib.org/blas/) libraries not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [blas]) or by setting the BLAS environment variable. if self._calc_info(blas): C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\numpy\distutils\system_info.py:1914: UserWarning: Blas (http://www.netlib.org/blas/) sources not found. Directories to search for the sources can be specified in the numpy/distutils/site.cfg file (section [blas_src]) or by setting the BLAS_SRC environment variable. if self._calc_info(blas): Traceback (most recent call last): File "C:\Users\micha\anaconda3\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 353, in main() File "C:\Users\micha\anaconda3\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 335, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "C:\Users\micha\anaconda3\lib\site-packages\pip_vendor\pyproject_hooks_in_process_in_process.py", line 251, in build_wheel return _build_backend().build_wheel(wheel_directory, config_settings, File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools\build_meta.py", line 410, in build_wheel return self._build_with_temp_dir( File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools\build_meta.py", line 395, in _build_with_temp_dir self.run_setup() File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools\build_meta.py", line 311, in run_setup exec(code, locals()) File "", line 126, in File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\core.py", line 184, in setup return run_commands(dist) File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\core.py", line 200, in run_commands dist.run_commands() File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 969, in run_commands self.run_command(cmd) File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools\dist.py", line 967, in run_command super().run_command(command) File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command cmd_obj.run() File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\wheel\bdist_wheel.py", line 368, in run self.run_command("build") File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 316, in run_command self.distribution.run_command(command) File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools\dist.py", line 967, in run_command super().run_command(command) File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command cmd_obj.run() File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\command\build.py", line 132, in run self.run_command(cmd_name) File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\cmd.py", line 316, in run_command self.distribution.run_command(command) File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools\dist.py", line 967, in run_command super().run_command(command) File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command cmd_obj.run() File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\setuptools_distutils\command\build_ext.py", line 359, in run self.build_extensions() File "C:\Users\micha\AppData\Local\Temp\pip-build-env-sw7hp0i0\overlay\Lib\site-packages\findblas\distutils.py", line 33, in build_extensions raise ValueError(txt) ValueError: Found BLAS library at: C:/Users/micha/anaconda3/Library/bin\mkl_rt.1.dll But .lib files are missing! Please reinstall it (e.g. 'pip install mkl-devel'). [end of output]

jdtuck / fdasrsf_python

Install issue #43