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jeetsukumaran / DendroPy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.
https://pypi.org/project/DendroPy/.
BSD 3-Clause "New" or "Revised" License
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PatristicDistanceMatrix #45

Closed basic99 closed 8 years ago

basic99 commented 8 years ago

Hi,

I have a script that uses PatristicDistanceMatrix. I found it does not work on 4.1 and I looked and it says legacy: will soon be deprecated. I tried using patristic_distance but since I use the whole tree this was much slower.

Jim

jeetsukumaran commented 8 years ago

As the deprecation message should have indicated, you can use the PhylogeneticDistanceMatrix instead: http://dendropy.org/primer/phylogenetic_distances.html

basic99 commented 8 years ago

Thanks. That works.

On 03/21/2016 04:43 PM, Jeet Sukumaran wrote:

As the deprecation message should have indicated, you can use the |PhylogeneticDistanceMatrix| instead: http://dendropy.org/primer/phylogenetic_distances.html

— You are receiving this because you authored the thread. Reply to this email directly or view it on GitHub https://github.com/jeetsukumaran/DendroPy/issues/45#issuecomment-199471903

James B. White Cary, NC 919-380-9615 http://whitecodingandmaps.com