Open Sautumn-Lin opened 1 year ago
rahel31
commented
1 year ago Same error here :
....../KrakenTools-master/kreport2mpa.py", line 80, in process_kraken_report taxid = int(l_vals[-3]) NameError: global name 'l_vals' is not defined
Did you solve it ? @Sautumn-Lin
Sautumn-Lin
commented
1 year ago yes, I just downloaded another "kreporet2.mpa.py", and it finally can be used. When Iuse computer
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From: rahel31 @.> Sent: Thursday, October 27, 2022 10:15:23 PM To: jenniferlu717/KrakenTools @.> Cc: LIN Ziqiu @.>; Mention @.> Subject: Re: [jenniferlu717/KrakenTools] error running kreport2mpa.py script, name 'l_vals' is not defined. (Issue #57)
Same error here :
....../KrakenTools-master/kreport2mpa.py", line 80, in process_kraken_report taxid = int(l_vals[-3]) NameError: global name 'l_vals' is not defined
— Reply to this email directly, view it on GitHubhttps://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fjenniferlu717%2FKrakenTools%2Fissues%2F57%23issuecomment-1293591392&data=05%7C01%7Czlinbz%40connect.ust.hk%7Cdab8e51917764d17f34f08dab825b156%7C6c1d415239d044ca88d9b8d6ddca0708%7C1%7C0%7C638024769275676338%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=NxBSWpwlCybhJ4oTzWkqmYUHtEe1UsSIOjp5piPk3rs%3D&reserved=0, or unsubscribehttps://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FA3VPWTQLOUEHYWUF67T2O6DWFKE7XANCNFSM6AAAAAARH4G4IU&data=05%7C01%7Czlinbz%40connect.ust.hk%7Cdab8e51917764d17f34f08dab825b156%7C6c1d415239d044ca88d9b8d6ddca0708%7C1%7C0%7C638024769275676338%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=fA29I9X4XvRVoWuf10uLLUufXMVvKDarf5aEcTclp3I%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>
Sautumn-Lin
commented
1 year ago continue… when I use computer later, I can send it to you.
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From: LIN Ziqiu @.> Sent: Friday, October 28, 2022 12:26:21 PM To: jenniferlu717/KrakenTools @.>; jenniferlu717/KrakenTools @.> Cc: Mention @.> Subject: Re: [jenniferlu717/KrakenTools] error running kreport2mpa.py script, name 'l_vals' is not defined. (Issue #57)
yes, I just downloaded another "kreporet2.mpa.py", and it finally can be used. When Iuse computer
Get Outlook for Androidhttps://aka.ms/AAb9ysg
From: rahel31 @.> Sent: Thursday, October 27, 2022 10:15:23 PM To: jenniferlu717/KrakenTools @.> Cc: LIN Ziqiu @.>; Mention @.> Subject: Re: [jenniferlu717/KrakenTools] error running kreport2mpa.py script, name 'l_vals' is not defined. (Issue #57)
Same error here :
....../KrakenTools-master/kreport2mpa.py", line 80, in process_kraken_report taxid = int(l_vals[-3]) NameError: global name 'l_vals' is not defined
— Reply to this email directly, view it on GitHubhttps://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fjenniferlu717%2FKrakenTools%2Fissues%2F57%23issuecomment-1293591392&data=05%7C01%7Czlinbz%40connect.ust.hk%7Cdab8e51917764d17f34f08dab825b156%7C6c1d415239d044ca88d9b8d6ddca0708%7C1%7C0%7C638024769275676338%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=NxBSWpwlCybhJ4oTzWkqmYUHtEe1UsSIOjp5piPk3rs%3D&reserved=0, or unsubscribehttps://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FA3VPWTQLOUEHYWUF67T2O6DWFKE7XANCNFSM6AAAAAARH4G4IU&data=05%7C01%7Czlinbz%40connect.ust.hk%7Cdab8e51917764d17f34f08dab825b156%7C6c1d415239d044ca88d9b8d6ddca0708%7C1%7C0%7C638024769275676338%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=fA29I9X4XvRVoWuf10uLLUufXMVvKDarf5aEcTclp3I%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>
rahel31
commented
1 year ago Thank you! Maybe you can put it on google drive and share the downloadable link here? It seems I cannot send an e-mail to you or personal message over github...
Sautumn-Lin
commented
1 year ago https://github.com/jenniferlu717/KrakenTools/releases/tag/v1.2
I can not send you the file on this web. You can try downloading it on this link, but I am unsure whether it is the right one.
rahel31
commented
1 year ago Ok, thanks :)
simonleandergrimm
commented
1 year ago @rahel31 Did this work for you? I still get the same error.
@jenniferlu717 did this also happen to others? If so, is there an easy fix on our side?
Traceback (most recent call last):
File "/[...]/kreport2mpa.py", line 188, in
gazollavolpiano
commented
1 year ago Dear @simonleandergrimm, I used the release v1.1 and it worked!
You can find it here: https://github.com/jenniferlu717/KrakenTools/releases/tag/v1.1
Any concerns about using this previous version to avoid that error @jenniferlu717? :)
Thank you!!
Traceback (most recent call last): File "/home/zlinbz/miniconda3/envs/bracken/bin/KrakenTools-master/kreport2mpa.py", line 188, in
main()
File "/home/zlinbz/miniconda3/envs/bracken/bin/KrakenTools-master/kreport2mpa.py", line 143, in main
report_vals = process_kraken_report(line)
File "/home/zlinbz/miniconda3/envs/bracken/bin/KrakenTools-master/kreport2mpa.py", line 80, in process_kraken_report
taxid = int(l_vals[-3])
NameError: name 'l_vals' is not defined. Did you mean: 'locals'?
Is there anyone who met this problem and solved it?