jeromekelleher / sc2ts-paper

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Add script to run MAFFT on cluster #211

Closed szhan closed 2 months ago

szhan commented 2 months ago

This is the script I used to generate MAFFT alignments on the BMRC. I have also added some test files. It is the same thing as done in the Viridian paper, except that we do not impute deleted bases with reference bases.