‘virFinder’ is not available (for R version 3.5.2)

jessieren / VirFinder

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

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‘virFinder’ is not available (for R version 3.5.2) #12

Closed shafi-OZ closed 5 years ago

shafi-OZ commented 5 years ago

Hi Jessieren I use R 3.5.2 "Eggshell Igloo". I am trying to install virfinder but it gives me the following warning

install.packages("virfinder") Warning in install.packages : package ‘virfinder’ is not available (for R version 3.5.2)

Can you help with that, please? Cheers

jessieren commented 5 years ago

Hi shafi-OZ,

Did you solve the problem? VirFinder is not on CRAN, so you have to install it by downloading the package and feed the path of the patch to the following command:

install.packages("/VirFinder_1.1.tar.gz", repos = NULL, type="source")

Hope it helps!

Jessie