jfear larval_gonad issues

jfear / larval_gonad

Preliminary study to figure out how many larval gonads are needed for RNA-Seq

https://jfear.github.io/larval_gonad_docs

MIT License

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issues

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Clean up GO analysis and change to use custom slim.

#221 jfear closed 4 years ago
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Adds MSL complex heatmap.

#220 jfear closed 4 years ago
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Germline centric gene subset

#219 jfear closed 4 years ago
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Describe 33pct

#218 jfear closed 4 years ago
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Removes deprecated bulk2-rnaseq-wf.

#217 jfear closed 4 years ago
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Adds 4th chrom distance plot.

#216 jfear closed 4 years ago
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Update tables again

#215 jfear closed 4 years ago
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Merge bulk

#214 jfear closed 4 years ago
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Re-label X/A.

#213 jfear closed 4 years ago
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Change zoom back to z-score

#212 jfear closed 4 years ago
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Basic stats for galletta.

#211 jfear closed 5 years ago
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Refactor plotting library

#210 jfear closed 5 years ago
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Sp vs lps

#209 jfear closed 5 years ago
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Expression plot

#208 jfear closed 5 years ago
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Move rep barplots

#207 jfear closed 5 years ago
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Add plots to cellselection

#206 jfear closed 5 years ago
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Move x2a plots

#205 jfear closed 5 years ago
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Germ recluster make outputs

#204 jfear closed 5 years ago
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Adds expression pattern panels.

#203 jfear closed 5 years ago
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Adds expression profiles.

#202 jfear closed 5 years ago
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Germ trajectory

#201 jfear closed 5 years ago
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Feature plots

#200 jfear closed 5 years ago
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Re-annotate clusters

#199 jfear closed 5 years ago
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Pol ii boxplot

#198 jfear closed 5 years ago
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Adds volume and sphere plots.

#197 jfear closed 5 years ago
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Re-color UMAPs

#196 jfear closed 5 years ago
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Updates bulk1.

#195 jfear closed 5 years ago
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Part 2: MSCI

#194 jfear closed 4 years ago
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Demas plot

#193 jfear closed 5 years ago
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Species demas

#192 jfear closed 5 years ago
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Update r626

#191 jfear closed 5 years ago
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Demasculinization Bar Plots

#190 jfear closed 5 years ago
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Pull out ns

#189 jfear closed 5 years ago
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Adds adult soma analysis comparing male vs female.

#188 jfear closed 5 years ago
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Generalized chromosome location plot

#187 jfear closed 4 years ago
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PS-biased X-linked genes

#186 jfear closed 4 years ago
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Is there demasculinization of somatic male biased expressed genes

#185 jfear closed 5 years ago
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Determine how many genes have moved from X.

#184 jfear closed 5 years ago
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Bulk demasculinization plots

#183 jfear closed 5 years ago
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Testis biased expression and ribosomal genes

#182 jfear closed 4 years ago
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Pull out non sex biased genes

#181 jfear closed 5 years ago
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Gene Subset Heatmaps

#180 jfear closed 5 years ago
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Update Autosome Plots

#179 jfear closed 5 years ago
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Run additional gene sets through X To A Workflow.

#178 jfear closed 5 years ago
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Adds male biased DEG for whole body adults.

#177 jfear closed 5 years ago
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Adult male biased gene expression

#176 jfear closed 5 years ago
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Revist Neo-X analysis

#175 jfear closed 5 years ago
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Adds additional scRNA-Seq DEG.

#174 jfear closed 5 years ago
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Expression Atlas: Testis Biased Expression

#173 jfear closed 5 years ago
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Adds TSPS.

#172 jfear closed 5 years ago
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