jfjlaros demultiplex issues

jfjlaros / demultiplex

Versatile FASTA/FASTQ demultiplexer.

MIT License

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issues

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demultiplex does not find any barcodes if -e NUM is larger than lenghth of the shortest actually provided barcode in a TSV file

#35 mmokrejs closed 3 months ago
11
Demultiplex with i7 index on dual index FASTQ

#34 agos316 closed 7 months ago
2
Demultiplex v1.2.2 misses barcodes starting with a (series of) DELetions aka supposedly incompletely amplified PCR products

#33 mmokrejs closed 8 months ago
11
Demultiplex cannot separate read-pairs by R1 barcode and R2 barcode simultaneously if at least either of the two is found

#32 mmokrejs closed 6 months ago
10
Does this tool works for Cell hashing data generated for cell ranger multi?

#31 bk11-lab closed 10 months ago
3
Does demultiplex pick up where it left off?

#30 jzehnpfennig closed 1 year ago
1
pairwise2.py doesn't work. Biopython deprecated it.

#29 Yyeserin closed 1 year ago
4
demultiplex unknown results

#28 seven1112233 closed 1 year ago
4
Is it possible for the barcode to contain non-ATCG characters?

#27 vivian9909 closed 2 years ago
1
All reads go into unknown

#26 Phagee closed 2 years ago
4
Does demultiplex support hamming distance?

#25 iquasere closed 2 years ago
1
Degenerated constructs

#24 iquasere closed 2 years ago
5
positions for barcodes do not work at all!

#23 antonkulaga closed 3 years ago
1
demultiplexing illumina with forward and reverse tag

#22 iadamo1 closed 3 years ago
1
Dual barcodes with match

#21 caonetto closed 3 years ago
3
Paired end support for match.

#20 Averstic closed 3 years ago
2
tags 5' and 3' in two different files usage

#19 iadamo1 closed 3 years ago
1
Output

#18 Kevin-Brockers closed 3 years ago
12
dealing with conflicts

#17 callumparr closed 3 years ago
5
demultiplex match outputs all input reads to each barcode

#16 callumparr closed 3 years ago
3
Cannot demultiplex based on barcode in header

#14 RominaAugustin closed 3 years ago
10
Parallel processing with multiple cores

#13 lokeshbio closed 3 years ago
5
Working with compressed or piped files

#12 bulksoil closed 4 years ago
2
How does one set the mismatch, deletion settings?

#11 rgranit closed 4 years ago
4
Is there an option to trim the barcode after the split?

#10 rgranit closed 4 years ago
2
Where is the barcode ?

#9 dridk closed 4 years ago
1
All reads go to UNKNOWN

#8 majogomezhughes closed 4 years ago
6
demultiplex: error: invalid barcodes file format

#7 majogomezhughes closed 4 years ago
8
All reads categorized as UNKNOWN

#6 wenweixiong closed 4 years ago
14
can't run demultiplex with SyntaxError

#5 AstreChen closed 4 years ago
1
Demultiplexing not working?

#4 ViriatoII closed 4 years ago
4
Biopython Warning

#3 nr0cinu closed 5 years ago
2
anaconda2 errors

#2 raw937 closed 6 years ago
2
dual indexes.

#1 raw937 closed 6 years ago
6