search

jiarong / VirSorter2

customizable pipeline to identify viral sequences from (meta)genomic data
GNU General Public License v2.0
225 stars 31 forks source link

Hallmark gene of each genome #165

Open YuyaKiguchi opened 1 year ago

YuyaKiguchi commented 1 year ago

Hi all,

Does anyone know which output file is the list of hallmark genes in each contig?

Best, Yuya

jiarong commented 1 year ago

Hi, you can find the hallmark genes in the affi-contigs.tab from --prep-for-dramv. The description of the file can be found in here. The column you need is category of the virus protein cluster ( hallmark genes are 0, other viral genes are 1, and non-viral genes are 2).

xzzhouxi commented 3 weeks ago

Hi, you can find the hallmark genes in the affi-contigs.tab from --prep-for-dramv. The description of the file can be found in here. The column you need is category of the virus protein cluster ( hallmark genes are 0, other viral genes are 1, and non-viral genes are 2).↳

Thank you so much. It is useful. I've been looking for this information for a long time!