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jiarong
/
VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data
GNU General Public License v2.0
225
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Default number of threads
#124
jbd
closed
2 years ago
1
Error in rule classify_by_group during Step 3
#123
WoCer2019
closed
2 years ago
3
Run virsort2 with multiple genomes
#122
whitnersyrena
opened
2 years ago
2
Error with "circular-linear-split.py"
#121
JiaLonghao1997
opened
2 years ago
1
Question on SOP
#120
chenyj8
closed
2 years ago
1
virsorter2(2.2.3) stay starked and in quiet without any errors after listing all snakemake jobs
#119
liupfskygre
closed
2 years ago
10
Error to download the dramv database
#118
Tsingsjeen
closed
2 years ago
1
Fix typo ~Conitg~
#117
telatin
opened
2 years ago
0
wrong in run virSorter2
#116
xiaozhangzhang123
opened
2 years ago
4
create conda environment error
#115
XiongGZ
closed
2 years ago
3
issues in run VirSort2
#114
xiaozhangzhang123
opened
2 years ago
0
combine genomes
#113
Biofarmer
closed
2 years ago
12
Duplicate seqname
#112
xiaozhangzhang123
closed
2 years ago
1
Error running test.fa
#111
leannmlindsey
closed
2 years ago
1
Error when running virsorter=2.2.3
#110
jq1242560952
closed
2 years ago
6
[Feature] pyhmmer
#109
alienzj
closed
2 years ago
1
Snakemake issue?
#108
drob2727
closed
2 years ago
3
Is there a way to generate the "for-dramv" without rerunning the whole pipeline?
#107
peng-ye
closed
2 years ago
1
Is there a way to generate the "for-dramv" without rerunning the whole pipeline?
#106
peng-ye
closed
2 years ago
2
Stuck on first step in snakemake pipeline
#105
btemperton
closed
2 years ago
1
SyntaxError: invalid syntax in circular-linear-split.py
#104
miczuppi
closed
2 years ago
1
Error when running test
#103
DeaconOfBiology
opened
2 years ago
3
issue with Error when installing VirSorter 2.2.3
#102
WEIdlam
opened
2 years ago
2
VIRSorter_affi-contigs.tab in Virsorter2?
#101
bishav6708
closed
2 years ago
0
Alternative genetic code
#100
YuyaKiguchi
closed
2 years ago
1
confict between final-viral-boundary file and the actual viral sequence
#99
mujiezhang
closed
2 years ago
4
failed to create symbolic link 'pp-linear.fna.0.split' from test data
#98
joshuakirsch
closed
2 years ago
2
KeyError 'max_score' during rule finalize
#97
TLStach
closed
2 years ago
1
Error with circular-linear-split.py
#96
Adarsh931
closed
2 years ago
2
Error in rule split_contig_file
#95
bramvandijk88
closed
2 years ago
6
Error in rule hmmsearch
#94
cmf1997
closed
2 years ago
11
Skin samples
#93
DaanJansen94
opened
3 years ago
1
Lack of environment:vs2
#92
gubingyu
closed
2 years ago
2
environment file not found - even though it is there
#91
kewilliamson2
closed
2 years ago
1
issues of run VirSorter2
#90
Edward-Tristan
closed
3 years ago
1
--prep-for-dramv --viral-gene-enrich-off filtering sequences out
#89
mlhoggard
closed
3 years ago
4
CreateCondaEnvironmentException: Could not create conda environment from /VirSorter2/virsorter/rules/../envs/vs2.yaml
#88
lifeifeifeifei
opened
3 years ago
8
Change database path?
#87
scubalaina
closed
3 years ago
2
Total number of viral scaffolds in combined dsDNAphage and ssDNA run < the sum of the two runs done separately
#86
Binvir
closed
3 years ago
2
Possible to leverage this tool for classifying short reads?
#85
UCRajkumar
closed
3 years ago
1
Typo in README.md
#84
smoe
opened
3 years ago
0
using one core?
#83
rotoscan
closed
3 years ago
1
Passively including template-config.yaml when using Snakemake
#82
shaman-narayanasamy
closed
3 years ago
2
errors when predict viruses
#81
mujiezhang
closed
3 years ago
4
Category info of the virsorter2 result
#80
zhou-sumei
closed
3 years ago
3
error when increase the threads for hmmsearch
#79
mujiezhang
closed
3 years ago
3
speed up the run
#78
mujiezhang
closed
3 years ago
0
issue with ValueError when running VirSorter 2.2.2 for test.fa
#77
WEIdlam
closed
3 years ago
5
Marker genes
#76
mabusfer
closed
3 years ago
4
Snakemake missing output files reason while using Slurm
#75
paulaistvan
closed
3 years ago
13
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