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jkanev / treetime

TreeTime is a data organisation, management and analysis tool. A tree is a hierarchical structure that arranges information in units and sub-units. TreeTime uses linked trees (one data item can be part of different distinct trees) to store and organise any general purpose data.
https://github.com/jkanev/treetime/blob/master/README.md
GNU General Public License v3.0
44 stars 5 forks source link

running TreeTime for the first time #3

Closed rhaynes74 closed 1 year ago

rhaynes74 commented 2 years ago

Hi, looks like a nice tool. I installed treetime and can run the executable, but then it pops up a dialog asking me for a directory or a file? I tried providing a directory but no dice. How do I proceed?

jkanev commented 2 years ago

Hi rhaynes74,

it asks you for a file to load. The file defines the number of trees, the fields in the data items, and the calculated fields. The data is stored in *.trt files (basically text files). Even when creating something new you start with an empty file. There are three example files provided in the data directory. You can also make your own, or I can send some more examples if you like.

Unfortunately there isn't a lot of documentation on the syntax yet, sorry about that...

All the best, Jacob.

Jacob Kanev Sweetmorn, 26th of Chaos, 3188

rhaynes74 commented 2 years ago

Thanks. - I will check it out!

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Jan 26, 2022, 6:59 PM -0330, Jacob Kanev @.***>, wrote:

Hi rhaynes74,

it asks you for a file to load. The file defines the number of trees, the fields in the data items, and the calculated fields. The data is stored in *.trt files (basically text files). Even when creating something new you start with an empty file. There are three example files provided in the data directory. You can also make your own, or I can send some more examples if you like.

Unfortunately there isn't a lot of documentation on the syntax yet, sorry about that...

All the best, Jacob.

Jacob Kanev Sweetmorn, 26th of Chaos, 3188

— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: @.***>

jkanev commented 2 years ago

Dear Ronald Haynes, just curious whether this has worked for you, and/or whether there's anything else I can do for you.

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Wednesday, 26 January 2022 23:40:08 CEST rhaynes74 wrote:

Thanks. - I will check it out!

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Jan 26, 2022, 6:59 PM -0330, Jacob Kanev @.***>, wrote:

Hi rhaynes74,

it asks you for a file to load. The file defines the number of trees, the fields in the data items, and the calculated fields. The data is stored in *.trt files (basically text files). Even when creating something new you start with an empty file. There are three example files provided in the data directory. You can also make your own, or I can send some more examples if you like.

Unfortunately there isn't a lot of documentation on the syntax yet, sorry about that...

All the best, Jacob.

Jacob Kanev Sweetmorn, 26th of Chaos, 3188

— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1022668828 You are receiving this because you commented.

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rhaynes74 commented 2 years ago

Hi Jacob - thanks for the message.   I haven’t had a chance to try this yet.  Would it be possible to provide a default setup with the installation?

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Apr 21, 2022, 1:41 PM -0230, Jacob Kanev @.***>, wrote:

Dear Ronald Haynes, just curious whether this has worked for you, and/or whether there's anything else I can do for you.

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Wednesday, 26 January 2022 23:40:08 CEST rhaynes74 wrote:

Thanks. - I will check it out!

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Jan 26, 2022, 6:59 PM -0330, Jacob Kanev @.***>, wrote:

Hi rhaynes74,

it asks you for a file to load. The file defines the number of trees, the fields in the data items, and the calculated fields. The data is stored in *.trt files (basically text files). Even when creating something new you start with an empty file. There are three example files provided in the data directory. You can also make your own, or I can send some more examples if you like.

Unfortunately there isn't a lot of documentation on the syntax yet, sorry about that...

All the best, Jacob.

Jacob Kanev Sweetmorn, 26th of Chaos, 3188

— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1022668828 You are receiving this because you commented.

Message ID: @.***>

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jkanev commented 2 years ago

Dear Ronald Haynes,

yes, of course, the package was meant to be complete. I must have missed this when testing. :)

I'll double check to make sure this is part of all the packages. Did you use one of the zip files, or did you install via pip?

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Thursday, 21 April 2022 19:13:15 CEST rhaynes74 wrote:

Hi Jacob - thanks for the message. I haven’t had a chance to try this yet. Would it be possible to provide a default setup with the installation?

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Apr 21, 2022, 1:41 PM -0230, Jacob Kanev @.***>, wrote:

Dear Ronald Haynes, just curious whether this has worked for you, and/or whether there's anything else I can do for you.

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Wednesday, 26 January 2022 23:40:08 CEST rhaynes74 wrote:

Thanks. - I will check it out!

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Jan 26, 2022, 6:59 PM -0330, Jacob Kanev @.***>, wrote:

Hi rhaynes74,

it asks you for a file to load. The file defines the number of trees, the fields in the data items, and the calculated fields. The data is stored in *.trt files (basically text files). Even when creating something new you start with an empty file. There are three example files provided in the data directory. You can also make your own, or I can send some more examples if you like.

Unfortunately there isn't a lot of documentation on the syntax yet, sorry about that...

All the best, Jacob.

Jacob Kanev Sweetmorn, 26th of Chaos, 3188

— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1022668828 You are receiving this because you commented.

Message ID: @.***>

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1105483867 You are receiving this because you commented.

Message ID: @.***>

rhaynes74 commented 2 years ago

Hi - thanks for the reply.  I tried the .zip file if I recall, but either is fine.

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On May 3, 2022, 6:46 PM -0230, Jacob Kanev @.***>, wrote:

Dear Ronald Haynes,

yes, of course, the package was meant to be complete. I must have missed this when testing. :)

I'll double check to make sure this is part of all the packages. Did you use one of the zip files, or did you install via pip?

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Thursday, 21 April 2022 19:13:15 CEST rhaynes74 wrote:

Hi Jacob - thanks for the message. I haven’t had a chance to try this yet. Would it be possible to provide a default setup with the installation?

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Apr 21, 2022, 1:41 PM -0230, Jacob Kanev @.***>, wrote:

Dear Ronald Haynes, just curious whether this has worked for you, and/or whether there's anything else I can do for you.

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Wednesday, 26 January 2022 23:40:08 CEST rhaynes74 wrote:

Thanks. - I will check it out!

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Jan 26, 2022, 6:59 PM -0330, Jacob Kanev @.***>, wrote:

Hi rhaynes74,

it asks you for a file to load. The file defines the number of trees, the fields in the data items, and the calculated fields. The data is stored in *.trt files (basically text files). Even when creating something new you start with an empty file. There are three example files provided in the data directory. You can also make your own, or I can send some more examples if you like.

Unfortunately there isn't a lot of documentation on the syntax yet, sorry about that...

All the best, Jacob.

Jacob Kanev Sweetmorn, 26th of Chaos, 3188

— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1022668828 You are receiving this because you commented.

Message ID: @.***>

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1105483867 You are receiving this because you commented.

Message ID: @.***>

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

jkanev commented 2 years ago

Brilliant, thanks for the quick reply. I'll notify you as soon as I have something new.

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Tuesday, 3 May 2022 23:19:05 CEST rhaynes74 wrote:

Hi - thanks for the reply. I tried the .zip file if I recall, but either is fine.

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On May 3, 2022, 6:46 PM -0230, Jacob Kanev @.***>, wrote:

Dear Ronald Haynes,

yes, of course, the package was meant to be complete. I must have missed this when testing. :)

I'll double check to make sure this is part of all the packages. Did you use one of the zip files, or did you install via pip?

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Thursday, 21 April 2022 19:13:15 CEST rhaynes74 wrote:

Hi Jacob - thanks for the message. I haven’t had a chance to try this yet. Would it be possible to provide a default setup with the installation?

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Apr 21, 2022, 1:41 PM -0230, Jacob Kanev @.***>, wrote:

Dear Ronald Haynes, just curious whether this has worked for you, and/or whether there's anything else I can do for you.

All the best, Jacob.

Jacob Kanev email: @. | threema: MXET6S4P instagram: j_kanev | twitter: @j_kanev | jabber: @. web: http://jkanev.info | blog: http://jacobkanev.wordpress.com

On Wednesday, 26 January 2022 23:40:08 CEST rhaynes74 wrote:

Thanks. - I will check it out!

Sincerely,

Dr. Ronald D. Haynes Professor, Department of Mathematics and Statistics Chair, MSc and Phd Scientific Computing Programs Memorial University of Newfoundland

We acknowledge that the lands on which Memorial University’s campuses are situated are in the traditional territories of diverse Indigenous groups, and we acknowledge with respect the diverse histories and cultures of the Beothuk, Mi’kmaq, Innu, and Inuit of this province. On Jan 26, 2022, 6:59 PM -0330, Jacob Kanev @.***>, wrote:

Hi rhaynes74,

it asks you for a file to load. The file defines the number of trees, the fields in the data items, and the calculated fields. The data is stored in *.trt files (basically text files). Even when creating something new you start with an empty file. There are three example files provided in the data directory. You can also make your own, or I can send some more examples if you like.

Unfortunately there isn't a lot of documentation on the syntax yet, sorry about that...

All the best, Jacob.

Jacob Kanev Sweetmorn, 26th of Chaos, 3188

— Reply to this email directly, view it on GitHub, or unsubscribe. Triage notifications on the go with GitHub Mobile for iOS or Android. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1022668828 You are receiving this because you commented.

Message ID: @.***>

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1105483867 You are receiving this because you commented.

Message ID: @.***>

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>

-- Reply to this email directly or view it on GitHub: https://github.com/jkanev/treetime/issues/3#issuecomment-1116668404 You are receiving this because you commented.

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jkanev commented 1 year ago

Dear Ronald Haynes,

Sorry for not notifying your earlier. I double checked the data directory in the Windows zip file and it was indeed empty. This is now fixed in today's release, https://github.com/jkanev/treetime/releases/tag/2023.1 . Also, since the previous release (2022.1), when starting the software for the first time, a dialog comes up that explaines to load a file first. I also started to flesh out the documentation a bit (https://treetime-data-manager.readthedocs.io/en/latest/data-format.html) so you can start creating new (or adapting existing) trt files. Hope this helps?

All the best, Jacob