jkrogager
commented
3 days ago Have you tried installing it using pip install instead?
Open sPaMFouR opened 3 days ago
jkrogager
commented
3 days ago Have you tried installing it using pip install instead?
In the fresh installation of v2.1.2, the calibration and std data files didn't copy/install to Python executable folder of PyNOT, when I cloned the repo from GitHub and installed using "python setup.py install". May be that's a bug that might be worth addressing.
This was after running :
pynot init spex 2024-11-24 --pars night1.ymlTraceback (most recent call last): File "/Users/avinash/Softwares/miniconda3/envs/pynot/bin/pynot", line 33, in
sys.exit(load_entry_point('PyNOT-redux==2.1.2', 'console_scripts', 'pynot')())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/bin/pynot", line 25, in importlib_load_entry_point
return next(matches).load()
^^^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/importlib/metadata/init.py", line 202, in load
module = import_module(match.group('module'))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/importlib/init.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "", line 1204, in _gcd_import
File "", line 1176, in _find_and_load
File "", line 1126, in _find_and_load_unlocked
File "", line 241, in _call_with_frames_removed
File "", line 1204, in _gcd_import
File "", line 1176, in _find_and_load
File "", line 1147, in _find_and_load_unlocked
File "", line 690, in _load_unlocked
File "", line 940, in exec_module
File "", line 241, in _call_with_frames_removed
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/PyNOT_redux-2.1.2-py3.11.egg/pynot/init.py", line 29, in
spec.loader.exec_module(instrument)
File "", line 940, in exec_module
File "", line 241, in _call_with_frames_removed
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/PyNOT_redux-2.1.2-py3.11.egg/pynot/alfosc.py", line 65, in
filter_table = Table.read(filter_table_fname, format='ascii.fixed_width')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/astropy/table/connect.py", line 62, in call
out = self.registry.read(cls, *args, *kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/astropy/io/registry/core.py", line 221, in read
data = reader(args, kwargs)
^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/astropy/io/ascii/connect.py", line 19, in io_read
return read(filename, kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/astropy/io/ascii/ui.py", line 487, in read
dat = reader.read(table)
^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/astropy/io/ascii/core.py", line 1424, in read
self.lines = self.inputter.get_lines(table, newline=newline)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/astropy/io/ascii/core.py", line 336, in get_lines
with get_readable_fileobj(table, encoding=self.encoding) as fileobj:
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/contextlib.py", line 137, in enter
return next(self.gen)
^^^^^^^^^^^^^^
File "/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/astropy/utils/data.py", line 365, in get_readable_fileobj
fileobj = io.FileIO(name_or_obj, "r")
^^^^^^^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: '/Users/avinash/Softwares/miniconda3/envs/pynot/lib/python3.11/site-packages/PyNOT_redux-2.1.2-py3.11.egg/pynot/calib/alfosc_filters.dat'