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jlanga
/
smsk_popoolation
Snakemake pipeline for Popoolation and Popoolation2
MIT License
7
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2
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use-envs-only problem / ModuleNotFoundError in line 3 of /home/*/smsk_popoolation/workflow/Snakefile: No module named 'pandas'
#28
Adam-Staniszewski
closed
2 months ago
1
chore(master): release 1.1.0
#27
github-actions[bot]
closed
7 months ago
1
feat: update all!
#26
jlanga
closed
7 months ago
0
feat: cleanup
#25
jlanga
closed
7 months ago
0
feat: compute coverage from pileups
#24
jlanga
closed
7 months ago
0
feat: handle chromosomes, parse units
#23
jlanga
closed
7 months ago
0
feat: restyle again
#22
jlanga
closed
7 months ago
0
feat: update to 2024 standards
#21
jlanga
closed
7 months ago
0
Possible issue with mkfifo
#20
azurillandfriend
closed
2 years ago
3
error in rule "raw_extract_genome"
#19
azurillandfriend
closed
2 years ago
2
use-envs-only problem
#18
azurillandfriend
closed
2 years ago
2
about the snakemake doesn't work
#17
yanzhongsino
closed
4 years ago
1
Updated README
#16
jlanga
closed
5 years ago
0
Devel
#15
jlanga
closed
5 years ago
0
Update Travis conf, linting, caching
#14
jlanga
closed
6 years ago
0
tmp folder in samtools / picard steps
#13
jlanga
closed
5 years ago
0
Get the joint mpileup tables from the single ones
#12
jlanga
closed
7 years ago
0
Multiple mpileups
#11
jlanga
closed
7 years ago
0
Join samples from different runs
#10
jlanga
closed
7 years ago
0
Remove Trimmomatic files
#9
jlanga
closed
7 years ago
1
add support to @RG tags in config.yaml
#8
jlanga
closed
7 years ago
0
compress to cram instead of bam
#7
jlanga
closed
7 years ago
0
Devel
#6
jlanga
closed
7 years ago
0
Update map.py
#5
jlanga
closed
7 years ago
0
add support for single end fastq files
#4
jlanga
closed
7 years ago
0
Memory in Java
#3
jlanga
closed
7 years ago
0
Set up Travis-CI
#2
jlanga
closed
7 years ago
0
Add test data
#1
jlanga
closed
7 years ago
0