Closed jlanga closed 5 years ago
When sorting, samtools writes a bunch of temporary files next to the final bam. if snakemake is interrupted, it removes some of the files, but not the intermediate ones. Use /tmp/ to store the intermediate files and for easier cleanup later.
snakemake
/tmp/
When sorting, samtools writes a bunch of temporary files next to the final bam. if
snakemakeis interrupted, it removes some of the files, but not the intermediate ones. Use/tmp/to store the intermediate files and for easier cleanup later.