search

jlanga / smsk_popoolation

Snakemake pipeline for Popoolation and Popoolation2
MIT License
7 stars 2 forks source link

about the snakemake doesn't work #17

Closed yanzhongsino closed 4 years ago

yanzhongsino commented 4 years ago

Hi, thank you for your contributions! While I want to install smsk_popoolation after installing anaconda3, I met an issue like the following. git clone https://github.com/jlanga/smsk_popoolation.git smsk_popoolation #run well cd smsk_popoolation # run well snakemake --use-conda --create-envs-only #dont't work and get the message

The program 'snakemake' is currently not installed. To run 'snakemake' please ask your administrator to install the package 'snakemake'.

so I need install 'snakemake' before using snakemake or 'snakemaker' is a script of 'smsk_popoolation'?

Any reply will be welcomed.

jlanga commented 4 years ago

Hi @yanzhongsino.

You need to install snakemake first. I recommend to do it through conda:

conda install snakemake

Cheers