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jlw-laputa / ngsplot

Automatically exported from code.google.com/p/ngsplot
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Error with rnaseq mode #38

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Hi! 

I am trying to launch the following command :

ngs.plot.r -G hg38 -C config_ngsplot.txt -L 2000 -R genebody -F rnaseq -O 
rnaseq_aout14

If I don't specify the option "-F rnaseq" it works, whereas it crashes with 
this mode... I don't manage to solve the problem. Can you help me please ??

The output is : 

Analyze bam files and calculate 
coverage........................................................................
............................................................                    

...................................................................Erreur dans 
{ : task 1 failed - "'seqselect' is defunct.
See help("Defunct")"
Calls: covMatrix -> %dopar% -> <Anonymous>
Exécution arrêtée

Thanks a lot!

Original issue reported on code.google.com by celine.e...@gmail.com on 26 Nov 2014 at 4:33

GoogleCodeExporter commented 9 years ago 
I thought that the 2.08 version was the last version because there is no latest 
version in the "download" tab of this website. 
However, with the following link, I could find the v2.41.4, that has solved my 
issue :-)

https://drive.google.com/folderview?id=0B1PVLadG_dCKN1liNFY0MVM1Ulk&usp=sharing

Original comment by celine.e...@gmail.com on 27 Nov 2014 at 9:43