Open vertesy opened 3 weeks ago
Describe the bug Plot fails on color palette error
To Reproduce Use a group.by with >12 categories
group.by
Expected behavior auto switch to another paletter
> StressBarplotPerCluster(combined.obj, group.by = GetClusteringRuns(combined.obj)[2]) Clustering runs found: c("RNA_snn_res.0.1", "RNA_snn_res.0.2", "RNA_snn_res.0.3", "RNA_snn_res.0.4", "RNA_snn_res.0.6", "RNA_snn_res.100") FALSE TRUE 0 31939 381 1 22288 180 10 192 240 11 300 130 12 172 0 2 22084 1 3 11093 1307 4 11092 812 5 8919 2 6 7471 16 7 1552 2525 8 1762 2184 9 2446 144 2 Y-categories present: FALSE, TRUE Error in scBarplot.CellFractions(obj = obj, fill.by = fill.by, group.by = group.by, : Length(custom_col_palette) should be >= nr. categories displayed.
StressBarplotPerCluster(combined.obj, group.by = 'R44.annotation_fine', custom_col_palette = F) works but colors are opposite to (green = stressed)
StressBarplotPerCluster(combined.obj, group.by = 'R44.annotation_fine', custom_col_palette = F)
Describe the bug Plot fails on color palette error
To Reproduce Use a
group.by
with >12 categoriesExpected behavior auto switch to another paletter