jodyphelan / TBProfiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
GNU General Public License v3.0
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Missing position #388

Open alantsangmb opened 3 months ago

alantsangmb commented 3 months ago

Hi, I have asked the same question in issue#164. However, I am afraid that question was missed, so I am opening another issue. I apologize for the repeated question. However, I really want to understand how the results are being flagged as missed. For the missing position part, am I right that TBProfiler would report the regions that lack sufficient coverage for the mutations listed in the tbdb mutation list, including those with uncertain and "not associated w R" confidence?

Thank you.