Help !! plot_heatmap in R (Phyloseq) weird error

[LeeJH5120]

Proceed with plot_heatmap with phyloseq object as input Code like

mothur.rel <- microbiome::transform(mothur_merge, "compositional") mothur_Ph <- subset_taxa(mothur.rel, Phylum=="Proteobacteria") mothur_Ph <- prune_taxa(names(sort(taxa_sums(mothur_Ph), TRUE)), mothur_Ph) plot_heatmap(mothur_Ph, sample.label="Type") or plot_heatmap(mothur_Ph, sample.label="Sample",sample.order = "group", na.value="white",low="#66CCFF", high="#000033")

Error in plot_heatmap(mothur_Ph, sample.label = "Type") : inherits(mm, c("microbiomeMarker", "marker_table")) is not TRUE

It was normal, but an error occurred

R.version : 4.2.0 phyloseq.version : 1.40.0

[david-barnett]

Either unload microbiomeMarker package or use phyloseq::plot_heatmap to disambiguate which function you're calling

[LeeJH5120]

To David

Thank you very much phyloseq::~

I've solved the problem.

Previously, it worked fine with "plot_heatmap ~", but it was embarrassing.

감사합니다.

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2023년 1월 26일 (목) 오후 5:07, David Barnett @.***>님이 작성:

Either unload microbiomeMarker package or use phyloseq::plot_heatmap to disambiguate which function you're calling

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[david-barnett]

No problem 😊 and don't forget to close this issue as completed