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joey711 / phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
http://joey711.github.io/phyloseq/
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beta diversity boxplots #883

Open eoinoh91 opened 6 years ago

eoinoh91 commented 6 years ago

Hello,

Is there a phyloseq function/workaround to generate boxplots of say, unifrac distances, to show differences between groups ? something similar to the attached..

image

Thanks!

Owen

ianartmor commented 6 years ago

Hi Owen,

Coming to this a bit late, but you can do this in microbiome, which works with phyloseq objects: https://microbiome.github.io/microbiome/Betadiversity.html

Ian

Stabilo12 commented 5 years ago

Hi Owen, Did you manage? Because I have the same questions, but the microbiome does not use UniFrac, right? I hope you can share your solution. Thanks!