search

joey711 / shiny-phyloseq

An interactive web application for demonstrating and using phyloseq.
http://joey711.github.io/shiny-phyloseq
GNU General Public License v3.0
60 stars 45 forks source link

Provenance error #51

Closed mmerk closed 9 years ago

mmerk commented 10 years ago

When trying to archive my session on shiny-phyloseq i'm getting an error saying the object '.graphEnv' not found. This same error is displayed in the code preview window. Thanks in advance for assistance.

joey711 commented 10 years ago

Thanks.

Can you provide some more detail? What you were doing before attempting to archive, your R session and system info, some details about your data, etc.

mmerk commented 10 years ago

sure-- 1) installed phylo-seq last week. 2) R version 3.1.1 (2014-07-10) -- "Sock it to Me"; MacBook Pro, Mavericks last week, Yosemite today. 3) data set is a .biom OTU file merged with the mapping from QIIME. otu_table() OTU Table: [ 2393 taxa and 234 samples ] sample_data() Sample Data: [ 234 samples by 24 sample variables ] tax_table() Taxonomy Table: [ 2393 taxa by 7 taxonomic ranks ] phy_tree() Phylogenetic Tree: [ 2393 tips and 2392 internal nodes ] 3) Last week I ran through the alpha diversity analyses and some of the ordination graphs before going to the provenance tab. Error appeared in the new Safari tab that popped after I hit the download archive button, and then the same error showed in the code preview window on the Provenance page. I ran through some more analyses and tried again with the same result. Today I started a new session, reloaded my data and tried again after performing 1 analysis with the same result. 4) the error in the R console = Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : object '.graphEnv' not found

Thanks!

joey711 commented 10 years ago

What version of Shiny are you using? .graphEnv is defined by the Shiny package, if I recall correctly.

mmerk commented 10 years ago

Shiny version 0.10.2.1