I am working on 16s data from Illumina Miseq that has been processed through QIIME version: 1.9.1 The .biom and .tre file will import fine but when I try to import the map file it will not allow access under available components to the sample variables. The file was converted via your example
I have been using R studio to work with phyloseq however due to time constraints I decided to give shiny a shot. I have been able to import and merge successfully this way and am currently conducting the analyses. Feeling like the GUI would be easier to explain to my advisors the processes that were actually occurring. Hopefully this is just a formatting error my part.
I have also tryed to convert using a text editor which results in an error
Hello joey711
I am working on 16s data from Illumina Miseq that has been processed through QIIME version: 1.9.1 The .biom and .tre file will import fine but when I try to import the map file it will not allow access under available components to the sample variables. The file was converted via your example
map <- import_qiime_sample_data("qiime_out/mappingfile.txt") save(map, file = "myphyseq2.RData")
I have been using R studio to work with phyloseq however due to time constraints I decided to give shiny a shot. I have been able to import and merge successfully this way and am currently conducting the analyses. Feeling like the GUI would be easier to explain to my advisors the processes that were actually occurring. Hopefully this is just a formatting error my part.
I have also tryed to convert using a text editor which results in an error