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jonas-fuchs / BAMdash

create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
GNU General Public License v3.0
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Summary statistics in text file #17

Closed KristinaGagalova closed 3 months ago

KristinaGagalova commented 3 months ago

Hi,

Thank you for this great tool, it's really useful to analyze genomic regions.

I was wondering: is there possible to output the summary statistics (avg. coverage, reads, GC etc) in a separate txt file? That would be really handy to anayze the results together with the plot

Thanks Kristina

jonas-fuchs commented 3 months ago

Hi Kristina,

So you mean the statistics shown within the plot? Should be easy to link this to the dump command.

Cheers, Jonas

KristinaGagalova commented 3 months ago

Yes! The same exact statistics but in a text format, nothing too fancy

jonas-fuchs commented 3 months ago

Should be fixed in 0.3. If you have any issues please give me some feedback. I also fixed some stuff with the coverage calculations ;).

bamstats should now be dumped with --dump