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jonas-fuchs / BAMdash

create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
GNU General Public License v3.0
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human whole genome #21

Open aardes opened 2 months ago

aardes commented 2 months ago

Nice work,

Can we use BAMdash for the human whole genome or exome ? or we need to specify the target region as a reference file?

jonas-fuchs commented 2 months ago

Hi thanks! You have to only specify the reference id. So you should be able to display a whole chromosomes although I have never tried. But specify the --binsize argument to at least 100 as all the coverage information is stored within the html. Multiple chromosomes/ref ids at once are not possible at the moment.