Add marginal transcript abundance inference

jonassibbesen / rpvg

Method for inferring path posterior probabilities and abundances from pangenome graph read alignments

MIT License

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Closed jonassibbesen closed 2 years ago

jonassibbesen commented 2 years ago

Improvements:

Adds ability to estimate the marginal transcript probabilities for haplotype-specific transcripts when using the transcripts inference model. This is enabled by providing a file containing the transcript origin of each path in the pantranscriptome using -f.