I seem to get a timeout everytime the script tries to get the references - I saw #35 which might be similar, but I have tried to change ads mirror and playing with my ssh variables so that I could check if they created the hickup - But nothing seems to change. I have recently updated to OS 10.9 but don't know if it is related. Here is the debug report:
csh:~/Downloads/ads_bibdesk-master> adsbibdesk.py -d 2005ApJ...625..539B
Starting ADS to BibDesk
ADS to BibDesk version 3.2.0
Python: 2.7.6 (default, Sep 9 2014, 15:04:36)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.39)]
process_token found article token 2005ApJ...625..539B
ADSConnector found bibcode/DOI 2005ApJ...625..539B
ADSHTMLParser found links: {u'ar': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=AR&db_key=AST',
u'article': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=ARTICLE&db_key=AST&high=',
u'bibtex': u'http://ads.astro.puc.cl/cgi-bin/nph-bib_query?bibcode=2005ApJ...625..539B&data_type=BIBTEX&db_key=AST&nocookieset=1',
u'citations': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=CITATIONS&db_key=AST',
u'custom': u'http://ads.astro.puc.cl/cgi-bin/nph-abs_connect?bibcode=2005ApJ...625..539B&data_type=Custom&format=%5c%5cbibitem%5b%25%5c2m%25%28y%29%5d%25%7bR%7d%20%25%5c5.3l%20%25%5cY,%25%5cj,%25%5cV,%25%5cp%5cn&return_fmt=LONG&db_key=AST&nocookieset=1',
u'ejournal': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=EJOURNAL&db_key=AST&high=',
u'preprint': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=PREPRINT&db_key=AST',
u'refcit': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=REFCIT&db_key=AST&high=',
u'references': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=REFERENCES&db_key=AST&high='}
Traceback (most recent call last):
File "adsbibdesk.py", line 1458, in
main()
File "adsbibdesk.py", line 189, in main
process_articles(args, prefs)
File "adsbibdesk.py", line 209, in process_articles
process_token(article_token, prefs, bibdesk)
File "adsbibdesk.py", line 273, in process_token
pdf = ads_parser.get_pdf()
File "adsbibdesk.py", line 1196, in get_pdf
resolved_url = get_redirect(url)
File "adsbibdesk.py", line 621, in get_redirect
out = urllib2.urlopen(url)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 127, in urlopen
return _opener.open(url, data, timeout)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 410, in open
response = meth(req, response)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 523, in http_response
'http', request, response, code, msg, hdrs)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 442, in error
result = self._call_chain(_args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 382, in _call_chain
result = func(_args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 629, in http_error_302
return self.parent.open(new, timeout=req.timeout)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 410, in open
response = meth(req, response)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 523, in http_response
'http', request, response, code, msg, hdrs)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 442, in error
result = self._call_chain(_args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 382, in _call_chain
result = func(_args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 629, in http_error_302
return self.parent.open(new, timeout=req.timeout)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 404, in open
response = self._open(req, data)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 422, in _open
'_open', req)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 382, in _call_chain
result = func(*args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 1214, in http_open
return self.do_open(httplib.HTTPConnection, req)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 1187, in do_open
r = h.getresponse(buffering=True)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/httplib.py", line 1045, in getresponse
response.begin()
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/httplib.py", line 409, in begin
version, status, reason = self._read_status()
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/httplib.py", line 365, in _read_status
line = self.fp.readline(_MAXLINE + 1)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/socket.py", line 476, in readline
data = self._sock.recv(self._rbufsize)
socket.timeout: timed out
Any help with this would be much appreciated - I find this tool invaluable - thanks for the development work.
I seem to get a timeout everytime the script tries to get the references - I saw #35 which might be similar, but I have tried to change ads mirror and playing with my ssh variables so that I could check if they created the hickup - But nothing seems to change. I have recently updated to OS 10.9 but don't know if it is related. Here is the debug report:
csh:~/Downloads/ads_bibdesk-master> adsbibdesk.py -d 2005ApJ...625..539B Starting ADS to BibDesk ADS to BibDesk version 3.2.0 Python: 2.7.6 (default, Sep 9 2014, 15:04:36) [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.39)] process_token found article token 2005ApJ...625..539B ADSConnector found bibcode/DOI 2005ApJ...625..539B ADSHTMLParser found links: {u'ar': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=AR&db_key=AST', u'article': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=ARTICLE&db_key=AST&high=', u'bibtex': u'http://ads.astro.puc.cl/cgi-bin/nph-bib_query?bibcode=2005ApJ...625..539B&data_type=BIBTEX&db_key=AST&nocookieset=1', u'citations': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=CITATIONS&db_key=AST', u'custom': u'http://ads.astro.puc.cl/cgi-bin/nph-abs_connect?bibcode=2005ApJ...625..539B&data_type=Custom&format=%5c%5cbibitem%5b%25%5c2m%25%28y%29%5d%25%7bR%7d%20%25%5c5.3l%20%25%5cY,%25%5cj,%25%5cV,%25%5cp%5cn&return_fmt=LONG&db_key=AST&nocookieset=1', u'ejournal': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=EJOURNAL&db_key=AST&high=', u'preprint': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=PREPRINT&db_key=AST', u'refcit': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=REFCIT&db_key=AST&high=', u'references': u'http://ads.astro.puc.cl/cgi-bin/nph-data_query?bibcode=2005ApJ...625..539B&link_type=REFERENCES&db_key=AST&high='} Traceback (most recent call last): File "adsbibdesk.py", line 1458, in
main()
File "adsbibdesk.py", line 189, in main
process_articles(args, prefs)
File "adsbibdesk.py", line 209, in process_articles
process_token(article_token, prefs, bibdesk)
File "adsbibdesk.py", line 273, in process_token
pdf = ads_parser.get_pdf()
File "adsbibdesk.py", line 1196, in get_pdf
resolved_url = get_redirect(url)
File "adsbibdesk.py", line 621, in get_redirect
out = urllib2.urlopen(url)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 127, in urlopen
return _opener.open(url, data, timeout)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 410, in open
response = meth(req, response)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 523, in http_response
'http', request, response, code, msg, hdrs)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 442, in error
result = self._call_chain(_args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 382, in _call_chain
result = func(_args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 629, in http_error_302
return self.parent.open(new, timeout=req.timeout)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 410, in open
response = meth(req, response)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 523, in http_response
'http', request, response, code, msg, hdrs)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 442, in error
result = self._call_chain(_args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 382, in _call_chain
result = func(_args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 629, in http_error_302
return self.parent.open(new, timeout=req.timeout)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 404, in open
response = self._open(req, data)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 422, in _open
'_open', req)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 382, in _call_chain
result = func(*args)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 1214, in http_open
return self.do_open(httplib.HTTPConnection, req)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", line 1187, in do_open
r = h.getresponse(buffering=True)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/httplib.py", line 1045, in getresponse
response.begin()
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/httplib.py", line 409, in begin
version, status, reason = self._read_status()
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/httplib.py", line 365, in _read_status
line = self.fp.readline(_MAXLINE + 1)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/socket.py", line 476, in readline
data = self._sock.recv(self._rbufsize)
socket.timeout: timed out
Any help with this would be much appreciated - I find this tool invaluable - thanks for the development work.
Boris