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jpuritz / dDocent

a bash pipeline for RAD sequencing
ddocent.com
MIT License
52 stars 42 forks source link

Error with main script - EOF management #62

Closed ne1s0n closed 4 years ago

ne1s0n commented 4 years ago

I encountered errors like:

/home/ubuntu/software/dDocent/dDocent: line 1383: warning: here-document at line 833 delimited by end-of-file (wanted `EOF')
/home/ubuntu/software/dDocent/dDocent: line 1384: syntax error: unexpected end of file

There are extra spaces after EOF at lines (which I removed):

https://github.com/jpuritz/dDocent/blob/master/dDocent#L778 https://github.com/jpuritz/dDocent/blob/master/dDocent#L833

I've also removed the trailing tab before EOF at lines:

https://github.com/jpuritz/dDocent/blob/master/dDocent#L789 https://github.com/jpuritz/dDocent/blob/master/dDocent#L843

And then it works fine.

dDocent version: 2.8.9 bash version: 4.4.19(1)-release (x86_64-pc-linux-gnu)

jpuritz commented 4 years ago

Fixed with https://github.com/jpuritz/dDocent/commit/66b1f7a756017ddd3866f5327b98c507e4cf8b3b