jstjohn SeqPrep issues - Githubissues

jstjohn / SeqPrep

Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

MIT License

140 stars 51 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

problem for merging 2 pairs of reads by "SeqPrep" tool

#45 modarzi opened 4 years ago
2
Pairs Processed is always 0 unless spinner is enabled

#44 abenjak opened 6 years ago
0
SeqPrep truncating rather than merging

#43 almitchell closed 6 years ago
7
refurbish installer for galaxyproject

#42 NCEichner opened 6 years ago
5
ERROR: Fastq id lines do not match

#41 chloeloiseau opened 6 years ago
7
How to install it?

#40 SuperPz opened 7 years ago
0
Is the default parameter setting too harsh for 16S V4

#39 mingjiew opened 8 years ago
1
20,000 records lead to segmentation fault

#38 ElDeveloper opened 8 years ago
4
low complexity filtering

#37 domenico-simone opened 8 years ago
0
typo

#36 hyphaltip closed 8 years ago
0
Error reading fastq files, but only with latest version

#35 JulianVosseberg opened 8 years ago
1
Missing reads between 40 and 50bp after trimming?

#34 jessicaathomas opened 8 years ago
2
Specified C99 standard to resolve build issue.

#33 samdemorest closed 8 years ago
0
New release version planned?

#32 mscheremetjew opened 8 years ago
2
Compiler error on Ubuntu -

#31 conchoecia opened 8 years ago
2
changed update_spinner to 'static inline'

#30 ghost closed 8 years ago
1
Segmentation fault while merging PE reads

#29 hudenise opened 9 years ago
5
Fix for masking overlapping adapters

#28 alliemclean closed 9 years ago
0
SeqPrep: quality scores in output files not consistently 33 or 64

#27 naterobinett closed 9 years ago
1
Add option for masking instead of trimming

#26 alliemclean closed 9 years ago
0
what's the different between -1 -2 options and -3 -4 options?

#25 sheitandard closed 9 years ago
4
SeqPrep installation problem

#24 pcastro88 closed 8 years ago
6
The q value parameter description is a bit weird

#23 aaronmck opened 9 years ago
0
compile error on Ubuntu

#22 jairideout opened 9 years ago
2
Patches for clang/LLVM 3.5 compilation

#21 alexpreynolds closed 9 years ago
1
Cannot compile under OS X 10.10.2

#20 alexpreynolds opened 9 years ago
1
number of joined reads drastic decrease

#19 brittbio opened 10 years ago
5
Option to turn of gzip output

#18 bwlang opened 10 years ago
4
Merged read not generated

#17 krcurtis closed 10 years ago
1
No alignment when adapters are found

#16 mairae opened 10 years ago
3
Build error on MacOSX 10.9

#15 genomematt opened 10 years ago
6
Keep reads if alignment is weak?

#14 FlorianLenz1981 closed 10 years ago
2
Max read length

#13 Mike-Chester closed 11 years ago
2
N when bases differ

#12 dakl closed 4 years ago
3
Quality score split int two lines

#11 hudenise closed 11 years ago
4
installation problem

#10 sourav8888 opened 11 years ago
4
multiprocessor support

#9 dakl closed 11 years ago
2
Reads with different length

#8 fumi-github opened 11 years ago
1
SeqPrep won't compile

#7 okon closed 11 years ago
2
Prevent extension beyond F and R read starts

#6 dshivak opened 12 years ago
0
Place LDFLAGS after OBJECTS in compile command

#5 DarwinAwardWinner closed 12 years ago
0
always discards reads

#4 earonesty closed 12 years ago
2
Discarded Reads

#3 jdh237 closed 13 years ago
1
quality score adding

#2 t-manny closed 13 years ago
1
The output is a binary file?

#1 arkyl closed 13 years ago
2