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jts
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nanopolish
Signal-level algorithms for MinION data
MIT License
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compare the differential methylation level between these two samples
#1098
luckyvivi
opened
1 year ago
0
Nanopolish Eventalign
#1097
gsukrit
opened
1 year ago
1
I can't find the compare_methylation.py script and I can't download the sample data
#1096
lanyunxin
closed
1 year ago
6
Nanopolish output: no alignments
#1095
tait123
opened
1 year ago
4
methylation tsv file from modified bam?
#1094
lkerr34
opened
1 year ago
2
big output file after nanopolish eventalign
#1093
VikArz02
closed
1 year ago
2
fatal error install
#1092
VikArz02
closed
1 year ago
0
Can't find the calculate_methylation_frequency.py
#1091
kjs13
closed
1 year ago
1
cannot build the docker file - error with make
#1090
fulaibaowang
closed
1 year ago
1
Error getting group name size
#1089
gsukrit
opened
1 year ago
4
raw signal normalization
#1088
xieyy46
closed
1 year ago
1
Why CpGs are clustered
#1087
weishwu
closed
1 year ago
2
Eventalign.txt file is too large
#1086
SEVEN-XYCHEN
closed
1 year ago
6
Error Installing Nanopolish
#1085
annamack
closed
1 year ago
3
Tutorial data link broken
#1084
Violeta-de-Anca
opened
1 year ago
6
Empty eventalign.txt file after running nanopolish eventalign
#1083
vincentwu1999
closed
1 year ago
9
Error faidx could not get contig length for contig {1}
#1082
lidi4
opened
1 year ago
5
Is possible to add cpggpc model to the lastest nanopolish program
#1081
joeyxu95
opened
1 year ago
0
Can I index trimmed fastqs?
#1080
weishwu
closed
1 year ago
2
Variant calling from Nanopore cDNA-seq?
#1079
CWYuan08
closed
1 year ago
3
install error: src/nanopolish_call_methylation.cpp:50:10: fatal error: minimap.h: No such file or directory
#1078
jackzhong1995
closed
1 year ago
3
no alignment in most of the reads
#1077
Arkadiy-Garber
closed
1 year ago
6
Nanopolish segmentation fault (code dumped) error
#1076
surbhiseth
closed
1 year ago
1
nanopolish variants --consensus needs fai index for input contigs
#1075
fanavarro
closed
1 year ago
1
POD5 support?
#1074
ellieanderson
closed
1 year ago
4
Is there a way to calculate methylation frequency of every individual motifs using nanopolish?
#1073
YingziZhang-github
closed
1 year ago
1
nanopolish index
#1072
rezarahman12
closed
1 year ago
13
nanopolish: error while loading shared libraries: libhdf5.so.10
#1071
SophieValk
closed
1 year ago
2
Nanopolish variants looks like stuck
#1070
HJArdin
closed
1 year ago
1
Call methylation example files not found.
#1069
aobermayer4
closed
1 year ago
2
eventalign --scale-events and event_level_mean
#1068
guangzhaocs
closed
1 year ago
1
nanopolish polya outputting .tsv with READ_FAILED_LOAD
#1067
tiffuhu
opened
1 year ago
4
MM/ML tag and hard/soft clipping alignments
#1066
PanZiwei
closed
1 year ago
1
running nanopolish on fast5 files generated with latest vbz compresison
#1065
rezarahman12
closed
1 year ago
2
Training an R10.4.1 methylation model
#1064
hasindu2008
closed
1 year ago
4
Error with "nanopolish call-methylation" caused by vbz-compressed fast5 and HDF5
#1063
valerieT1998
closed
1 year ago
1
Detection of CpG site in the long CGG expansion
#1062
NobEura
closed
1 year ago
2
Creating a vcf files that include BaseCalledReadsWithVariant in the report
#1061
epiBioCore
closed
1 year ago
7
R10 using slow5
#1060
hiruna72
opened
1 year ago
0
Error when trying to variant call using an R10 model
#1059
hasindu2008
closed
1 year ago
15
CpGs towards the start and end of a read not considered by Nanopolish?
#1058
lkerr34
opened
1 year ago
7
Nanopolish index error: Error in getting group name size
#1057
tjprins
closed
1 year ago
10
Using nanopolish index on a fast5 directory ending with a backslash produces paths that don't exist
#1056
zigavicic
opened
1 year ago
1
R10 support?
#1055
jguhlin
closed
1 year ago
4
modbam Null iterator error
#1054
GianlucaMattei
closed
1 year ago
2
Trying to call Dam and Dcm methylation, error
#1053
nad302
closed
1 year ago
3
hdf5 version link dead
#1052
dinovski
closed
1 year ago
1
No output in vcf
#1051
smf96
closed
1 year ago
7
Tutorial broken dataset link
#1050
MmasterT
closed
1 year ago
3
Nanopolish - IGV Visualization
#1049
GianlucaMattei
closed
1 year ago
1
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