search

julibinho / Cpseudotuberculosis

0 stars 1 forks source link

comparing the protein sequences #6

Open sanahaddad opened 7 years ago

sanahaddad commented 7 years ago

dear all, I've found the site to compare the protein sequences : https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi. it's about comparing every protein sequence to the PSSM Database with RPS-Blast.

julibinho commented 7 years ago

Great, we can try it, I saw the maximal number of protein is 4000, so you can run it four time to cover the 16000 proteins, right?

Best

sanahaddad commented 7 years ago

I think w have to run it five Times because w have 16141 protein sequences

julibinho commented 7 years ago

ok, but I think it is feasible. Let me know if you need some help.

Best

sanahaddad commented 7 years ago

Ok. Thank you