JenCabral
commented
7 years ago Same is happening to me. I've installed this as directed on a jupyterlab extension of jupyterhub. The installation had the following output:
> npm pack /tmp/jupyterlab-fasta-master
npm WARN lifecycle jupyterlab-fasta@0.1.0~prepublish: cannot run in wd %s %s (wd=%s) jupyterlab-fas ta@0.1.0 npm run build /tmp/jupyterlab-fasta-master
jupyterlab-fasta-0.1.0.tgz
> node node-version-check.js
> npm install
> canvas@1.6.6 install /usr/share/jupyter/lab/staging/node_modules/canvas
> node-gyp rebuild
gyp WARN EACCES user "root" does not have permission to access the dev dir "/root/.node-gyp/6.11.1"
gyp WARN EACCES attempting to reinstall using temporary dev dir "/usr/share/jupyter/lab/staging/nod e_modules/canvas/.node-gyp"
Package cairo was not found in the pkg-config search path.
Perhaps you should add the directory containing `cairo.pc'
to the PKG_CONFIG_PATH environment variable
No package 'cairo' found
gyp: Call to './util/has_lib.sh freetype' returned exit status 0 while in binding.gyp. while trying to load binding.gyp
gyp ERR! configure error
gyp ERR! stack Error: `gyp` failed with exit code: 1
gyp ERR! stack at ChildProcess.onCpExit (/usr/lib/node_modules/npm/node_modules.bundled/node-gy p/lib/configure.js:305:16)
gyp ERR! stack at emitTwo (events.js:106:13)
gyp ERR! stack at ChildProcess.emit (events.js:191:7)
gyp ERR! stack at Process.ChildProcess._handle.onexit (internal/child_process.js:215:12)
gyp ERR! System Linux 3.10.0-514.26.2.el7.x86_64
gyp ERR! command "/usr/bin/node" "/usr/lib/node_modules/npm/node_modules/node-gyp/bin/node-gyp.js" "rebuild"
gyp ERR! cwd /usr/share/jupyter/lab/staging/node_modules/canvas
gyp ERR! node -v v6.11.1
gyp ERR! node-gyp -v v3.4.0
gyp ERR! not ok
@jupyterlab/application-top@0.10.2 /usr/share/jupyter/lab/staging
└─┬ jupyterlab-fasta@0.1.0
└─┬ msa@1.0.3
├─┬ backbone-childs@1.0.3
│ └── underscore@1.8.3
├─┬ backbone-thin@1.0.9
│ ├── backbone-events-standalone@0.2.7
│ └── backbone-extend-standalone@0.1.2
├── backbone-viewj@1.0.2
├─┬ bio.io@1.0.6
│ ├── vow@0.4.16
│ └─┬ xmldoc@0.5.1
│ └── sax@1.1.6
├── biojs-events@0.0.4
├── biojs-model@0.0.2
├── biojs-vis-seqlogo@0.0.14
├── blueimp_canvastoblob@1.0.0
├── browser-saveas@1.0.1
├── dom-helper@1.0.0
├── jbone@1.2.0
├── koala-js@1.0.7
├── linear-scale@0.0.1
├── menu-builder@0.0.7
├── mouse-pos@1.0.3
├── msa-colorschemes@1.0.10
├── stat.seqs@0.1.21
└─┬ xhr@2.4.0
├─┬ global@4.3.2
│ ├─┬ min-document@2.19.0
│ │ └── dom-walk@0.1.1
│ └── process@0.5.2
├── is-function@1.0.1
└─┬ parse-headers@2.0.1
├── for-each@0.3.2
└── trim@0.0.1
npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@^1.0.0 (node_modules/chokidar/node_modules /fsevents):
npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@1.1.2: wanted {"os" :"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"})
npm WARN optional SKIPPING OPTIONAL DEPENDENCY: canvas@1.6.6 (node_modules/canvas):
npm WARN optional SKIPPING OPTIONAL DEPENDENCY: canvas@1.6.6 install: `node-gyp rebuild`
npm WARN optional SKIPPING OPTIONAL DEPENDENCY: Exit status 1
> npm run build
> @jupyterlab/application-top@0.10.2 build /usr/share/jupyter/lab/staging
> webpack
Hash: fb4ebd3f170d0f8fe498
Version: webpack 2.7.0
Time: 8354ms
Asset Size Chunks Chunk Names
674f50d287a8c48dc19ba404d20fe713.eot 166 kB [emitted]
af7ae505a9eed503f8b8e6982036873e.woff2 77.2 kB [emitted]
fee66e712a8a08eef5805a46892932ad.woff 98 kB [emitted]
b06871f281fee6b241d60582ae9369b9.ttf 166 kB [emitted]
912ec66d7572ff821749319396470bde.svg 444 kB [emitted] [big]
0.bundle.js 893 kB 0 [emitted] [big]
main.bundle.js 6.88 MB 1 [emitted] [big] main
0.bundle.js.map 1.08 MB 0 [emitted]
main.bundle.js.map 8.26 MB 1 [emitted] main
[26] ./~/@jupyterlab/application/lib/index.js 5.48 kB {1} [built]
[439] ./~/@jupyterlab/application-extension/lib/index.js 6.12 kB {1} [optional] [built]
[455] ./~/@jupyterlab/notebook-extension/lib/index.js 38.8 kB {1} [optional] [built]
[457] ./~/@jupyterlab/running-extension/lib/index.js 1.67 kB {1} [optional] [built]
[458] ./~/@jupyterlab/settingeditor-extension/lib/index.js 2.63 kB {1} [optional] [built]
[459] ./~/@jupyterlab/shortcuts-extension/lib/index.js 3.7 kB {1} [optional] [built]
[460] ./~/@jupyterlab/tabmanager-extension/lib/index.js 1.76 kB {1} [optional] [built]
[461] ./~/@jupyterlab/terminal-extension/lib/index.js 7.29 kB {1} [optional] [built]
[462] ./~/@jupyterlab/theme-dark-extension/lib/index.js 766 bytes {1} [optional] [built]
[463] ./~/@jupyterlab/theme-light-extension/lib/index.js 770 bytes {1} [optional] [built]
[464] ./~/@jupyterlab/tooltip-extension/lib/index.js 5.57 kB {1} [optional] [built]
[465] ./~/@jupyterlab/vega2-extension/lib/index.js 6.13 kB {1} [optional] [built]
[466] ./~/es6-promise/auto.js 179 bytes {1} [built]
[467] ./~/font-awesome/css/font-awesome.min.css 892 bytes {1} [built]
[481] ./build/index.out.js 8.56 kB {1} [built]
+ 1124 hidden modules
WARNING in ./build/index.out.js
Module not found: Error: Can't resolve 'jupyterlab-fasta/' in '/usr/share/jupyter/lab/staging/build '
@ ./build/index.out.js 43:32-60When I check jupyter labextension list jupyterlab-fasta@0.1.0 is enabled and ok
danpf
Not exactly sure if i'm clicking where i should be... but when I right click on a fasta file in the file browser sidebar I don't see an open as fasta format option.