karel-brinda rnftools issues

karel-brinda / rnftools

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.

http://karel-brinda.github.io/rnftools

MIT License

14 stars 5 forks source link

issues

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Wrong read name - more than 2 reads in tuple?

#77 rsuchecki opened 5 years ago
0
RNF spec inaccessible

#76 rsuchecki closed 5 years ago
2
No output from rnftools.mishmash.DwgSim

#75 zihhuafang opened 5 years ago
2
gnuplot error

#74 alperyilmaz opened 5 years ago
1
Don't use absolute paths in input: / output:

#73 karel-brinda opened 5 years ago
0
Error Producing LAVEnder Report

#72 RSherman15 opened 5 years ago
6
Add support for VCF output of DWGsim

#71 karel-brinda closed 5 years ago
0
DWGSim hangs, then deletes files when job is killed

#70 RSherman15 closed 5 years ago
3
Pickling Error

#69 RSherman15 opened 5 years ago
5
ArtIllumina's number_of_read_tuples does not work

#68 simonepignotti opened 6 years ago
1
max ( read_nb, (coverage * genome_size / read_len) )

#67 simonepignotti opened 6 years ago
0
Devel linux build fails on Travis

#66 simonepignotti opened 6 years ago
0
Use number_of_read_tuples param when greater than coverage's

#65 simonepignotti opened 6 years ago
0
[dwgsim] 0 reads error for low coverage and short genomes

#64 simonepignotti closed 6 years ago
1
Add support for curesim random reads

#63 karel-brinda closed 7 years ago
0
Mark random reads that are mixed in by simulator in LRN (genome ID)

#62 sibyllewohlgemuth closed 7 years ago
5
CIGAR extension in suffix of LRN

#61 sibyllewohlgemuth opened 7 years ago
0
Subseq

#60 karel-brinda closed 7 years ago
0
Update

#59 karel-brinda closed 7 years ago
0
Minor update

#58 karel-brinda closed 7 years ago
0
RNFtools resurrection

#57 karel-brinda closed 7 years ago
0
rnftools liftover - AssertionError - assert (last_right1 is None) or (last_right1==left1)

#56 karel-brinda opened 7 years ago
1
Fix subparser bug in cli variant of rnftools

#55 karel-brinda closed 7 years ago
0
program rnftools: argparse does not work

#54 karel-brinda closed 7 years ago
1
Dwgsim - error when 0 simulated reads

#53 karel-brinda opened 8 years ago
0
Local variable 'single_reads_statistics' referenced before assignment

#52 karel-brinda opened 8 years ago
1
question: how to override mapper parameters?

#51 astewart-twist closed 7 years ago
2
Dockerization

#50 astewart-twist closed 8 years ago
1
Any idea what this error

#49 astewart-twist closed 7 years ago
15
Problem with mapper evaluation example?

#48 astewart-twist closed 8 years ago
1
Pdf

#47 karel-brinda closed 8 years ago
0
RNFtools 0.2.7

#46 karel-brinda closed 8 years ago
0
RNFtools 0.2.6

#45 karel-brinda closed 8 years ago
0
RNFtools 0.2.5

#44 karel-brinda closed 8 years ago
0
LAVEnder: text log

#43 karel-brinda closed 8 years ago
0
RNFtools 0.3

#42 karel-brinda closed 8 years ago
0
Errors when Snakefile changed and old experiment directory kept

#41 karel-brinda opened 8 years ago
1
Wrong RNF names in simulations using DwgSim

#40 karel-brinda opened 8 years ago
0
_open() takes at least 1 positional argument (0 given)

#39 karel-brinda closed 8 years ago
1
0.2.3.1

#38 karel-brinda closed 8 years ago
0
Prevent number_of_read_tuples being equal to 0

#37 karel-brinda closed 8 years ago
1
MIShmash: support for naming samples and additional RNF comments

#36 karel-brinda opened 8 years ago
0
RNFtools 0.2.3

#35 karel-brinda closed 8 years ago
0
FAQ - git behind proxy

#34 karel-brinda closed 8 years ago
0
Art - error when coverage is too low

#33 karel-brinda closed 8 years ago
0
FqMerger - too many open files

#32 karel-brinda opened 8 years ago
2
MIShmash option: remove auxiliary directory

#31 karel-brinda opened 8 years ago
0
Position of key for overall graphs

#30 karel-brinda closed 8 years ago
0
Correct example in RNF spec (take it from the RNF paper)

#29 karel-brinda opened 8 years ago
0
Minor update

#28 karel-brinda closed 8 years ago
0