kehh / biolink

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Clicking Traits tab on Taxon Details Editor creates an unhandled exception (screen capture provided) #182

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
What steps will reproduce the problem?

Whenever I enter the Taxon Details Editor from the Taxon Explorer, I get an 
exception when I click on the Traits tab (please see attached screen capture)

What version of the product are you using? On what operating system?

Build 526

Original issue reported on code.google.com by mbp.revi...@gmail.com on 28 Sep 2012 at 3:58

Attachments:

GoogleCodeExporter commented 9 years ago

Original comment by david.ba...@gmail.com on 28 Sep 2012 at 4:05

GoogleCodeExporter commented 9 years ago
Hi,

I have started looking at this issue, but unfortunately I am unable to 
reproduce the error using just the steps you describe. I notice that you 
reported using build 526 of BioLink. Build 538 is the version currently 
available in the downloads area. Would you be able to download and install this 
version and see if this error still occurs? Other information that may be 
useful in diagnosing the problem would include whether or not your database was 
an old BioLink database (Version 2.x or earlier), or if it was created since 
the release of 3.0 using the starter database.

Cheers, David.

Original comment by david.ba...@gmail.com on 28 Sep 2012 at 4:21

GoogleCodeExporter commented 9 years ago
Also relevant may be the version of SQL Server that you are using as well.

Cheers, David.

Original comment by david.ba...@gmail.com on 28 Sep 2012 at 4:27

GoogleCodeExporter commented 9 years ago
[deleted comment]
GoogleCodeExporter commented 9 years ago
[deleted comment]
GoogleCodeExporter commented 9 years ago
Hi David,

Data were imported from BioLink 2. Updating to Build 538 and running 
scriptBiolink_V2_5_0_Scripts.sql seemed to fix this problem. However, the 
script did not run error free:

Erors when running Biolink_V2_5_0_Scripts.sql

[27%] Adding/Updating vwBiotaAssociateText...
Msg 208, Level 16, State 1, Procedure vwBiotaAssociateText, Line 7
Invalid object name 'tblBiotaAssociate'.
Msg 15151, Level 16, State 1, Line 1
Cannot find the object 'vwBiotaAssociateText', because it does not exist or you 
do not have permission.
Msg 15151, Level 16, State 1, Line 2
Cannot find the object 'vwBiotaAssociateText', because it does not exist or you 
do not have permission.
Adding Stored Procedures
[30%] Adding/Updating help_index...

All the Best,

- Aubrey

Original comment by aubreymoore2013@gmail.com on 21 Oct 2012 at 2:09

GoogleCodeExporter commented 9 years ago
Hi Aubrey,

Thanks for the update. As it turns out these error messages are expected, and 
are an artifact of the script supporting really old BioLink database schemas. 
Some time between version 1.0 and version 2.0 of BioLink the tblBiotaAssociate 
table was deprecated in favour of the more generic tblAssociate table, thus 
reflecting more accurately the possible modalities of associate relationships 
(i.e. relationships can be formed between specimens, taxa and even just text, 
and not just between two taxa). Newer versions of the BioLink schema, 
therefore, don't have the tblBiotaAssociate table, nor the views/stored 
procedures that utilize it. 

When I get a chance I will update the documentation so that it explains what 
these error messages mean. In the meantime, they can safely be ignored.

Regards, David.

Original comment by david.ba...@gmail.com on 21 Oct 2012 at 4:26