kensung-lab / hypo-assembler

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Suitable ONT Reads length of hypo-assembler input for T2T assembly #15

Open Johnsonzcode opened 3 months ago

Johnsonzcode commented 3 months ago

Dear author Thanks to break the band that using only ONT and short reads to finish T2T assembly. Recently, I tried this awesome tool, the length of ONT reads reach to N50 ~ 40kb, but I didn't get a decent contigs. I used flye contigs and Nextdenovo contigs as input, contigs N50 ~ 3.6Mb, 6.4Mb respectively. So I would like to know the length of ONT reads of HG00733, did author use the specific set of reads to do assembly?

Best wish Johnson