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kevinblighe / EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
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P cutoff #104

Closed carlosaya2 closed 2 years ago

carlosaya2 commented 2 years ago

Thank you for great tool.

this is rather a stupid question.

I am applying a 0.05 pvalue cutoff which log10 is -1.3. the problem is that it is not showing that threshold on the plot. I think it is because the way is requested in the function 10e-6. does it need to match the 10e- format?

image

cheers

carlos

kevinblighe commented 2 years ago

Hi @carlosaya2 , for the pCutoffparameter, the value should be set as 0.05. Then, EnhancedVolcanowill transform this to the -log10 scale internally.

Let me know if that resolves the problem.

Kind regards, Kevin