kevinblighe / EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
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Not able to install EnhancedVolcano? Not able to install proj4 #88

Closed mathavan10 closed 2 years ago

mathavan10 commented 2 years ago

Hi Kevin, I am trying to install EnhancedVolcano R package but I could not able to do it. The error message showed as it is dependency errors - proj package. I am not able to install proj4

Please guide me

The error message is pasted below

** libs gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DUSE_PROJ6_API=1 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c p4.c -o p4.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o proj4.so p4.o -lproj -lsqlite3 -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lproj /usr/bin/ld: cannot find -lsqlite3 collect2: error: ld returned 1 exit status make: *** [/usr/share/R/share/make/shlib.mk:10: proj4.so] Error 1 ERROR: compilation failed for package ‘proj4’

The downloaded source packages are in ‘/tmp/Rtmpj4p6ye/downloaded_packages’

rajkump commented 2 years ago

Having the same issue Warning message: In .inet_warning(msg) : package ‘proj4 ’ is not available for Bioconductor version '3.13'

rajkump commented 2 years ago

https://support.bioconductor.org/p/9140024/#9140025

kevinblighe commented 2 years ago

Thank you for posting that solution on Bioconductor Support forum