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kevinblighe / EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
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Volcano plot without any labels #90

Closed DM087 closed 2 years ago

DM087 commented 2 years ago

Hi Kevin, thanks for the wonderful package! I am trying to use it on Mac iOS and it seems that the lab is not working for me. The code that I am trying to run is

EnhancedVolcano(data,lab = data$Gene,x = 'beta',y = 'P')

str(data)

'data.frame': 7 obs. of 3 variables: $ Gene: chr "Name1" "Name2" "Name3" "Name4" ... $ beta: num 0.0118 0.014 0.012 0.0134 0.0117 ... $ P : num 7.10e-78 2.17e-69 6.50e-63 1.72e-62 1.38e-61 ...

Any thoughts on what might be going wrong here? Thanks

mathavanpu commented 2 years ago

EnhancedVolcano(p, lab = rownames(p), x = "log2FoldChange", y = "padj", title = 'PCGS2_Vs_PCGS4', selectLab = c(""), pCutoff = 10e-2, FCcutoff = 1 , pointSize = 3.0, labSize = 3.0 , ylim = c(0,50), xlim = c(-6,6))

kevinblighe commented 2 years ago

Hi, can you define 'not working'?

kevinblighe commented 2 years ago

Please re-open if the issue persists.