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kevinblighe / EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
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Labels not working #93

Closed margotcj closed 2 years ago

margotcj commented 2 years ago

hi! When I use the "selectLab = c", and choose various genes, (I chose 10 in this instance ), not all of them show up on my plot. I checked to make sure that they were within the range of the p value and log fold change. Do you know why this could be? When I add the "drawconnectors = TRUE" it solves part of the issue, but it still does not show all of the genes. Also, It makes the plot look a bit messier when I add this option.

Thank you for your help!

kevinblighe commented 2 years ago

Hi, please show the code that you are running. Please also show the top portion of your input results table.

If the plot seems 'messier' with drawConnectors = TRUE, then try to alter the p-value threshold (pcutoff)

kevinblighe commented 2 years ago

Please re-open if the issue persists.