kevinkovalchik RawTools issues

kevinkovalchik / RawTools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.

Apache License 2.0

64 stars 19 forks source link

issues

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RawToolsViz 2.0.7

#85 lyons89 opened 7 months ago
0
Column pressure extract

#84 dingxuan1990 opened 1 year ago
2
Fixes to get the code running on my system

#83 romanzenka opened 1 year ago
0
Issues with compiling the source code

#82 romanzenka opened 1 year ago
1
Provided test file gives System.ArgumentOutOfRangeException using Windows

#81 VittorioRainaldi opened 1 year ago
4
-logdump flag doesn't generate output

#80 tommasomari opened 1 year ago
0
Cannot parse and output QE Orbitrap data

#79 EstrellaXD closed 2 years ago
0
Thermo Tribrid data are not parsed

#78 mmross0321 opened 2 years ago
9
Using CLParser

#77 biobibibi closed 2 years ago
4
Failing on QC analysis with database

#76 ilham-rabbi opened 2 years ago
10
Fixing generalDev

#75 chrishuges closed 2 years ago
0
update general dev branch

#74 chrishuges closed 2 years ago
0
General dev

#73 chrishuges closed 2 years ago
1
Missing zip file for the most recent release.

#72 dpryan79 closed 2 years ago
3
How to run the search with xtandem on linux?

#71 sorenwacker closed 2 years ago
2
Typo in QC csv columns?

#70 kesinger closed 2 years ago
2
Output MS3 Scans in MGF

#69 IvanSilbern closed 2 years ago
7
Does RawTool support Iodo-TMT ?

#68 sorenwacker closed 2 years ago
4
How to run label-free quant? I guess its -u the parameter, but the results are not including right ions

#67 CandyClass closed 2 years ago
2
test dataset link broken

#66 ll-portes closed 2 years ago
2
rawtools.sh --version

#65 sorenwacker closed 2 years ago
1
System.IndexOutOfRangeException: Index was outside the bounds of the array

#64 Nils342 closed 2 years ago
17
Does RawTools work with FAIMS files

#63 CatFrancoMRC opened 3 years ago
3
fixed mass tolerance for MS2

#62 chrishuges closed 3 years ago
0
Chenge mass tolerances for X!tandem search

#61 GeorgTascher closed 3 years ago
12
Using Matrix data with quant to assign spectra to TMT-10 plex samples

#60 andreabc closed 2 years ago
2
improvement for BoxCar

#59 fazeliniah opened 3 years ago
5
System.AggregateException

#58 mtinti closed 3 years ago
3
two CV values?

#57 aulke opened 3 years ago
23
Running QC on single raw files

#56 glnegri opened 4 years ago
3
System.UnauthorizedAccessException (((

#55 KanshinED1 closed 4 years ago
1
Impurity correction

#54 pfangpGlyco opened 4 years ago
7
Limit number of CPUs

#53 sorenwacker closed 4 months ago
8
Not able to install rawtools with pip anymore.

#52 sorenwacker closed 4 years ago
2
rawtools.sh -qc .... -d . when file is in the same directory Unhandled Exception

#51 sorenwacker closed 4 years ago
0
System.MissingMethodException: Method 'Array.Empty' not found

#50 eltonjrv opened 4 years ago
11
No output with data-independent .raw file

#49 SMSweet opened 4 years ago
1
Change FDR for XTandem search

#48 EvgenyKanshin opened 5 years ago
2
Error with quantification flags

#47 chrishuges opened 5 years ago
1
Can't parse my Raw File

#46 ncarrut opened 5 years ago
2
how to input the impurity correction when run the RawTools

#45 pfangpGlyco closed 4 years ago
2
VIZ-Tool - possible improvements

#44 roberthardt opened 5 years ago
1
Loading saved parameters creates duplicate modification entries

#43 roberthardt opened 5 years ago
1
RawTools v2.0.1 error on Linux

#42 chrishuges closed 5 years ago
3
RawToolsViz 2.0.0

#41 kevinkovalchik closed 5 years ago
2
X!tandem did not work

#40 jefftong2019 closed 5 years ago
6
Help wanted: can't seem to do the QC DB search

#39 CatFra closed 5 years ago
1
Additional useful metric/setting suggestions

#38 roberthardt closed 5 years ago
9
Extracting & plotting peptide/protein results from X!tandem search

#37 roberthardt closed 5 years ago
4
RawToolsGUI-beta fails when using X!Tandem

#36 roberthardt closed 5 years ago
1