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kevinkovalchik / RawTools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
Apache License 2.0
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Verb '-f' is not recognized. #32

Closed sorenwacker closed 5 years ago

sorenwacker commented 5 years ago

Describe the bug Neither the -f nor the --file argument is recognized in version 1.4.2.

Description of raw file TMT 11plex MS2 data

Command line arguments mono /home/.../Software/RawTools/current/RawTools.exe -f "/home/.../workspace/uofc/lsarp/proteomics/0002-D003_MS2-TMT/raw/S8926_A_TMT_T_MS2_181116.raw" -o "/home/.../workspace/uofc/lsarp/proteomics/0002-D003_MS2-TMT/rawtools/test" -p -q -m -x -r TMT11 2

Command line output Please paste the entire output from the command line, if applicable (i.e. everything that appeared after you hit enter until things stopped working).

RawTools 1.4.2
Copyright © 2018 Kevin Kovalchik & Christopher Hughes
RawTools makes use of the RawFileReader reading tool. Copyright © 2016 by Thermo Fisher Scientific, Inc. All rights reserved.
ERROR(S):
Verb '--files' is not recognized.

  --help       Display this help screen.

  --version    Display version information.

Screenshots If applicable, add screenshots to help explain your problem.

Desktop & RawTools information:

Additional context Add any other context about the problem here.

sorenwacker commented 5 years ago

I forgot the parse.