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kevinkovalchik / RawTools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
Apache License 2.0
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Identipy doesn't install on Mac #4

Closed neiladhikari closed 6 years ago

neiladhikari commented 6 years ago

1) pip install command doesn't work (empty INSTALL file) 2) pip install identify defaults to python3.6. Using pip2.7 install identipy fails to install identipy. 3) Cannot call identipy from RawTools script.

kevinkovalchik commented 6 years ago

Hello,

Sorry you're having issues installing IdentiPy. It isn't our package, so there's limited support I can offer. One thing you could try is running pip directly from python 2.7. So you would invoke something like this: $python2.7 -m pip install identipy.zip where identipy.zip is the downloaded repository.

If this fails, you should probably open an issue on their bitbucket page: https://bitbucket.org/levitsky/identipy I believe you don't need to register on Bitbucket to create an issue if you don't want to.

Kevin

kevinkovalchik commented 6 years ago

Actually, I thought of something else:

Did you use pip2.7 install or pip2.7 install . from inside the downloaded repository?

If you can send me the installation commands and error messages you got when trying to install, I might be able to tell if it is a problem with IdentiPy which you need to ask them about, of if it is a command line syntax problem.

Kevin

neiladhikari commented 6 years ago

Hi Kevin, Thanks for pointing that out, pip2.7 install . did work! I guess I wasn't using the correct syntax. I am now able to get rest of the steps in the workflow going, lets see, hoping for the best. Neil

kevinkovalchik commented 6 years ago

Great! I'll close this issue then, but feel free to let us know if you run into any problems.

Kevin