No output with data-independent .raw file

kevinkovalchik / RawTools

RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.

Apache License 2.0

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No output with data-independent .raw file #49

Open SMSweet opened 4 years ago

SMSweet commented 4 years ago

Looks like a great tool for DDA .raw files. Would it be possible to have some output for data-independent .raw files? E.g. ion Injection Times etc would be very useful. At the moment it seems every data-independent MS2 is rejected, with no output .txt file generated at all. #

kevinkovalchik commented 4 years ago

Hi Steve,

Sorry for the slow response! You are correct that RawTools only supports DDA .raw files. Unfortunately, because of how it is structured this would not be easy to refactor. However, I am in the planning stages for a similar tool which will support DDA, DIA and targeted methods as well. There isn't a repository for it yet, but I will update this issue to let you know when development starts.

Best wishes, Kevin